Variant report

Variant	rs10252636
Chromosome Location	chr7:27488809-27488810
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10242634	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10252511	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10268623	0.85[ASN][1000 genomes]
rs10269160	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10272441	0.83[EUR][1000 genomes]
rs10272561	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10272948	0.91[EUR][1000 genomes]
rs10276795	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1112620	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11763775	0.85[ASN][1000 genomes]
rs12540319	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1476538	0.90[EUR][1000 genomes]
rs1524522	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1989910	0.86[ASN][1000 genomes]
rs2074340	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2074341	0.94[ASN][1000 genomes]
rs28418930	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28625460	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3915086	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3915089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4141138	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4719892	0.84[EUR][1000 genomes]
rs4722698	0.83[EUR][1000 genomes]
rs4722700	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4722702	0.91[ASN][1000 genomes]
rs4722706	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4722707	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56843699	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62454765	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62454789	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62454790	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6953785	0.94[ASN][1000 genomes]
rs757141	0.86[ASN][1000 genomes]
rs7786854	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7792305	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9691111	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27487200-27493400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:27488600-27489200	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr7:27488600-27489200	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr7:27488600-27489400	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr7:27488800-27489000	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr7:27488800-27489000	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr7:27488800-27489200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
8	chr7:27488800-27489400	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr7:27488800-27489600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr7:27488800-27493400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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