Variant report

Variant	rs7792305
Chromosome Location	chr7:27488288-27488289
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10242634	0.85[EUR][1000 genomes]
rs10252511	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10252636	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10269160	0.85[EUR][1000 genomes]
rs10276795	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1112620	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1524522	0.83[AFR][1000 genomes]
rs2074340	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs28418930	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs28625460	0.84[AFR][1000 genomes]
rs3915086	0.84[AFR][1000 genomes]
rs3915089	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4141138	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4722700	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4722706	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4722707	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56843699	0.84[AFR][1000 genomes]
rs62454789	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs62454790	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27487200-27493400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:27488000-27488600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr7:27488200-27488400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr7:27488200-27488400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr7:27488200-27488800	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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