Variant report

Variant	rs4722700
Chromosome Location	chr7:27463198-27463199
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:27384042..27388224-chr7:27459528..27463800,5	MCF-7	breast:
2	chr7:27275263..27277588-chr7:27463038..27465057,2	MCF-7	breast:
3	chr7:27462153..27463834-chr7:27472462..27475213,2	MCF-7	breast:
4	chr7:27459213..27461483-chr7:27463058..27464839,2	MCF-7	breast:
5	chr7:27457673..27459494-chr7:27461716..27463972,3	MCF-7	breast:
6	chr7:27383310..27384917-chr7:27463125..27464669,2	MCF-7	breast:
7	chr7:27461567..27463754-chr7:27531036..27533117,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235574	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10242634	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10252511	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10252636	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10268623	0.83[ASN][1000 genomes]
rs10269160	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10272441	0.87[EUR][1000 genomes]
rs10272561	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10272948	0.86[EUR][1000 genomes]
rs10276795	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1112620	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11763775	0.83[ASN][1000 genomes]
rs12540319	0.94[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs1476538	0.87[EUR][1000 genomes]
rs1524522	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1989910	0.85[ASN][1000 genomes]
rs2074340	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2074341	0.92[ASN][1000 genomes]
rs28418930	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28625460	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs3915086	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs3915089	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4141138	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4719892	0.88[EUR][1000 genomes]
rs4722698	0.87[EUR][1000 genomes]
rs4722702	1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs4722706	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4722707	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56843699	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs62454765	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62454789	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62454790	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6953785	0.92[ASN][1000 genomes]
rs757141	0.85[ASN][1000 genomes]
rs7786854	0.92[ASN][1000 genomes]
rs7792305	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9691111	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27458800-27463200	Weak transcription	Spleen	Spleen
2	chr7:27458800-27464000	Weak transcription	HUVEC	blood vessel
3	chr7:27459200-27464600	Weak transcription	Pancreas	Pancrea
4	chr7:27460600-27463200	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr7:27460800-27463600	Weak transcription	Fetal Intestine Small	intestine
6	chr7:27461200-27463200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr7:27461800-27464000	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr7:27461800-27464600	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr7:27461800-27465200	Enhancers	Stomach Mucosa	stomach
10	chr7:27462200-27463800	Enhancers	Colonic Mucosa	Colon
11	chr7:27462400-27464600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr7:27462600-27464600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr7:27462800-27464800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr7:27462800-27464800	Enhancers	HMEC	breast
15	chr7:27462800-27464800	Enhancers	NHEK	skin
16	chr7:27463000-27463200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr7:27463000-27463400	Enhancers	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links