Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10242634	0.90[EUR][1000 genomes]
rs10252511	0.91[EUR][1000 genomes]
rs10252636	0.91[EUR][1000 genomes]
rs10269160	0.91[EUR][1000 genomes]
rs10272441	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10272561	0.84[EUR][1000 genomes]
rs10276795	0.91[EUR][1000 genomes]
rs1112620	0.91[EUR][1000 genomes]
rs11762257	1.00[ASN][1000 genomes]
rs1476538	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2074340	0.89[EUR][1000 genomes]
rs28418930	0.90[EUR][1000 genomes]
rs28668661	1.00[ASN][1000 genomes]
rs3915089	0.91[EUR][1000 genomes]
rs4141138	0.90[EUR][1000 genomes]
rs4719892	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722698	0.93[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722700	0.86[EUR][1000 genomes]
rs4722706	0.91[EUR][1000 genomes]
rs4722707	0.91[EUR][1000 genomes]
rs62454765	0.85[EUR][1000 genomes]
rs62454789	0.90[EUR][1000 genomes]
rs62454790	0.90[EUR][1000 genomes]
rs62454832	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27487200-27493400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:27488800-27493400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:27489400-27493600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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