The 2.0 version of rSNPBase

Variant report

Variant rs41297891
Chromosome Location chr1:56046759-56046760
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:56037200-56047200 Weak transcription Esophagus oesophagus
2 chr1:56039000-56046800 Weak transcription Skeletal Muscle Female skeletal muscle
3 chr1:56039200-56047200 Weak transcription Psoas Muscle Psoas
4 chr1:56040600-56058600 Enhancers Breast Myoepithelial Primary Cells Breast
5 chr1:56042000-56047400 Weak transcription Placenta Amnion Placenta Amnion
6 chr1:56042200-56049600 Weak transcription Fetal Muscle Leg muscle
7 chr1:56042200-56052400 Weak transcription Right Atrium heart
8 chr1:56043000-56049600 Weak transcription Brain Germinal Matrix brain
9 chr1:56043000-56049800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
10 chr1:56043000-56050200 Weak transcription HUES64 Cell Line embryonic stem cell
11 chr1:56043000-56050400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
12 chr1:56044400-56051400 Enhancers Muscle Satellite Cultured Cells --
13 chr1:56044600-56048400 Enhancers HSMM muscle
14 chr1:56044800-56046800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr1:56045000-56047600 Enhancers Osteobl bone
16 chr1:56045000-56048200 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
17 chr1:56045000-56048400 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr1:56045200-56048200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr1:56045200-56048400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
20 chr1:56045200-56050000 Weak transcription Ovary ovary
21 chr1:56045400-56047200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr1:56045400-56048600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr1:56045600-56049600 Weak transcription Fetal Stomach stomach
24 chr1:56045800-56048400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr1:56046000-56048000 Enhancers NHEK skin
26 chr1:56046000-56048200 Enhancers NHLF lung
27 chr1:56046000-56048400 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
28 chr1:56046200-56047000 Enhancers Brain Inferior Temporal Lobe brain
29 chr1:56046200-56047000 Enhancers Brain Substantia Nigra brain
30 chr1:56046200-56047000 Enhancers Rectal Smooth Muscle rectum
31 chr1:56046200-56047400 Enhancers NH-A brain
32 chr1:56046400-56046800 Active TSS HSMMtube muscle
33 chr1:56046400-56047000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
34 chr1:56046400-56047000 Enhancers Brain Angular Gyrus brain
35 chr1:56046400-56047000 Enhancers Brain Dorsolateral Prefrontal Cortex brain
36 chr1:56046400-56047000 Enhancers Colon Smooth Muscle Colon
37 chr1:56046400-56047000 Enhancers A549 lung
38 chr1:56046400-56048000 Enhancers ES-I3 Cell Line embryonic stem cell
39 chr1:56046400-56048200 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
40 chr1:56046600-56046800 Enhancers Brain Cingulate Gyrus brain
41 chr1:56046600-56046800 Enhancers HMEC breast
42 chr1:56046600-56046800 Enhancers NHDF-Ad bronchial
43 chr1:56046600-56047000 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
44 chr1:56046600-56047000 Enhancers Cortex derived primary cultured neurospheres brain
45 chr1:56046600-56047000 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
46 chr1:56046600-56047000 Enhancers Brain Anterior Caudate brain
47 chr1:56046600-56047000 Enhancers Brain Hippocampus Middle brain
48 chr1:56046600-56047000 Enhancers Fetal Lung lung
49 chr1:56046600-56047000 Enhancers Hela-S3 cervix
50 chr1:56046600-56047200 Weak transcription Aorta Aorta

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Last update: Aug 31, 2015