The 2.0 version of rSNPBase

Variant report

Variant rs72667878
Chromosome Location chr1:56045655-56045656
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:56037200-56047200 Weak transcription Esophagus oesophagus
2 chr1:56039000-56045800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
3 chr1:56039000-56046000 Weak transcription NHLF lung
4 chr1:56039000-56046800 Weak transcription Skeletal Muscle Female skeletal muscle
5 chr1:56039200-56045800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr1:56039200-56047200 Weak transcription Psoas Muscle Psoas
7 chr1:56039600-56046200 Weak transcription NH-A brain
8 chr1:56040600-56058600 Enhancers Breast Myoepithelial Primary Cells Breast
9 chr1:56042000-56046200 Weak transcription Brain Inferior Temporal Lobe brain
10 chr1:56042000-56046400 Weak transcription Colon Smooth Muscle Colon
11 chr1:56042000-56046600 Weak transcription Brain Anterior Caudate brain
12 chr1:56042000-56047400 Weak transcription Placenta Amnion Placenta Amnion
13 chr1:56042200-56046200 Weak transcription Brain Cingulate Gyrus brain
14 chr1:56042200-56046200 Weak transcription Brain Substantia Nigra brain
15 chr1:56042200-56046400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
16 chr1:56042200-56046400 Weak transcription Brain Angular Gyrus brain
17 chr1:56042200-56046400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
18 chr1:56042200-56046600 Weak transcription Cortex derived primary cultured neurospheres brain
19 chr1:56042200-56046600 Weak transcription Brain Hippocampus Middle brain
20 chr1:56042200-56049600 Weak transcription Fetal Muscle Leg muscle
21 chr1:56042200-56052400 Weak transcription Right Atrium heart
22 chr1:56042800-56046400 Weak transcription ES-I3 Cell Line embryonic stem cell
23 chr1:56042800-56046400 Enhancers HMEC breast
24 chr1:56043000-56049600 Weak transcription Brain Germinal Matrix brain
25 chr1:56043000-56049800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
26 chr1:56043000-56050200 Weak transcription HUES64 Cell Line embryonic stem cell
27 chr1:56043000-56050400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
28 chr1:56043400-56046400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
29 chr1:56044400-56051400 Enhancers Muscle Satellite Cultured Cells --
30 chr1:56044600-56048400 Enhancers HSMM muscle
31 chr1:56044800-56046800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr1:56045000-56046200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr1:56045000-56047600 Enhancers Osteobl bone
34 chr1:56045000-56048200 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
35 chr1:56045000-56048400 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
36 chr1:56045200-56046400 Enhancers NHDF-Ad bronchial
37 chr1:56045200-56048200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr1:56045200-56048400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
39 chr1:56045200-56050000 Weak transcription Ovary ovary
40 chr1:56045400-56046000 Weak transcription NHEK skin
41 chr1:56045400-56046600 Weak transcription Fetal Lung lung
42 chr1:56045400-56047200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
43 chr1:56045400-56048600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
44 chr1:56045600-56046200 Weak transcription HSMMtube muscle
45 chr1:56045600-56049600 Weak transcription Fetal Stomach stomach

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Last update: Aug 31, 2015