The 2.0 version of rSNPBase

Variant report

Variant rs41297893
Chromosome Location chr1:56046871-56046872
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:56037200-56047200 Weak transcription Esophagus oesophagus
2 chr1:56039200-56047200 Weak transcription Psoas Muscle Psoas
3 chr1:56040600-56058600 Enhancers Breast Myoepithelial Primary Cells Breast
4 chr1:56042000-56047400 Weak transcription Placenta Amnion Placenta Amnion
5 chr1:56042200-56049600 Weak transcription Fetal Muscle Leg muscle
6 chr1:56042200-56052400 Weak transcription Right Atrium heart
7 chr1:56043000-56049600 Weak transcription Brain Germinal Matrix brain
8 chr1:56043000-56049800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
9 chr1:56043000-56050200 Weak transcription HUES64 Cell Line embryonic stem cell
10 chr1:56043000-56050400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
11 chr1:56044400-56051400 Enhancers Muscle Satellite Cultured Cells --
12 chr1:56044600-56048400 Enhancers HSMM muscle
13 chr1:56045000-56047600 Enhancers Osteobl bone
14 chr1:56045000-56048200 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
15 chr1:56045000-56048400 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
16 chr1:56045200-56048200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr1:56045200-56048400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
18 chr1:56045200-56050000 Weak transcription Ovary ovary
19 chr1:56045400-56047200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
20 chr1:56045400-56048600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr1:56045600-56049600 Weak transcription Fetal Stomach stomach
22 chr1:56045800-56048400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr1:56046000-56048000 Enhancers NHEK skin
24 chr1:56046000-56048200 Enhancers NHLF lung
25 chr1:56046000-56048400 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
26 chr1:56046200-56047000 Enhancers Brain Inferior Temporal Lobe brain
27 chr1:56046200-56047000 Enhancers Brain Substantia Nigra brain
28 chr1:56046200-56047000 Enhancers Rectal Smooth Muscle rectum
29 chr1:56046200-56047400 Enhancers NH-A brain
30 chr1:56046400-56047000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
31 chr1:56046400-56047000 Enhancers Brain Angular Gyrus brain
32 chr1:56046400-56047000 Enhancers Brain Dorsolateral Prefrontal Cortex brain
33 chr1:56046400-56047000 Enhancers Colon Smooth Muscle Colon
34 chr1:56046400-56047000 Enhancers A549 lung
35 chr1:56046400-56048000 Enhancers ES-I3 Cell Line embryonic stem cell
36 chr1:56046400-56048200 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
37 chr1:56046600-56047000 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
38 chr1:56046600-56047000 Enhancers Cortex derived primary cultured neurospheres brain
39 chr1:56046600-56047000 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
40 chr1:56046600-56047000 Enhancers Brain Anterior Caudate brain
41 chr1:56046600-56047000 Enhancers Brain Hippocampus Middle brain
42 chr1:56046600-56047000 Enhancers Fetal Lung lung
43 chr1:56046600-56047000 Enhancers Hela-S3 cervix
44 chr1:56046600-56047200 Weak transcription Aorta Aorta
45 chr1:56046600-56048600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
46 chr1:56046800-56047000 Flanking Active TSS Brain Cingulate Gyrus brain
47 chr1:56046800-56047000 Enhancers Skeletal Muscle Female skeletal muscle
48 chr1:56046800-56047000 Flanking Active TSS HMEC breast
49 chr1:56046800-56047000 Flanking Active TSS HSMMtube muscle
50 chr1:56046800-56047000 Flanking Active TSS NHDF-Ad bronchial

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Last update: Aug 31, 2015