Variant report

Variant	rs72667840
Chromosome Location	chr1:56012445-56012446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs17416725	0.84[EUR][1000 genomes]
rs17417072	0.84[EUR][1000 genomes]
rs41297891	0.84[EUR][1000 genomes]
rs41297893	0.84[EUR][1000 genomes]
rs55718597	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55736946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56058312	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56161495	1.00[EUR][1000 genomes]
rs56237538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56246158	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57193275	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57832473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61574505	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72667823	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs72667828	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs72667829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72667830	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72667831	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72667834	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72667835	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72667842	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72667844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72667851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72667861	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72667865	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72667866	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72667868	0.92[EUR][1000 genomes]
rs72667875	0.92[EUR][1000 genomes]
rs72667878	0.84[EUR][1000 genomes]
rs72667893	0.92[EUR][1000 genomes]
rs72669719	0.84[EUR][1000 genomes]
rs72669723	0.84[EUR][1000 genomes]
rs72669726	0.84[EUR][1000 genomes]
rs72669728	0.84[EUR][1000 genomes]
rs72669729	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10184	chr1:55728755-56084833	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56009400-56013000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:56009600-56012600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:56009600-56012800	Weak transcription	NHDF-Ad	bronchial
4	chr1:56010800-56013000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:56011200-56012800	Enhancers	Osteobl	bone
6	chr1:56011600-56026400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:56012200-56012800	Enhancers	HepG2	liver
8	chr1:56012400-56013600	Enhancers	Colon Smooth Muscle	Colon
9	chr1:56012400-56013600	Enhancers	Fetal Stomach	stomach

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