Variant report

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs17112489	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17416725	1.00[EUR][1000 genomes]
rs17417072	1.00[EUR][1000 genomes]
rs41297891	1.00[EUR][1000 genomes]
rs41297893	1.00[EUR][1000 genomes]
rs55718597	0.84[EUR][1000 genomes]
rs55736946	0.84[EUR][1000 genomes]
rs56058312	0.92[EUR][1000 genomes]
rs56161495	0.84[EUR][1000 genomes]
rs56237538	0.84[EUR][1000 genomes]
rs56246158	0.84[EUR][1000 genomes]
rs57193275	0.84[EUR][1000 genomes]
rs57832473	0.84[EUR][1000 genomes]
rs61574505	0.84[EUR][1000 genomes]
rs72667829	0.84[EUR][1000 genomes]
rs72667830	0.84[EUR][1000 genomes]
rs72667831	0.84[EUR][1000 genomes]
rs72667834	0.84[EUR][1000 genomes]
rs72667835	0.84[EUR][1000 genomes]
rs72667840	0.84[EUR][1000 genomes]
rs72667842	0.84[EUR][1000 genomes]
rs72667844	0.84[EUR][1000 genomes]
rs72667851	0.84[EUR][1000 genomes]
rs72667861	0.92[EUR][1000 genomes]
rs72667865	0.92[EUR][1000 genomes]
rs72667866	0.92[EUR][1000 genomes]
rs72667868	0.92[EUR][1000 genomes]
rs72667875	0.92[EUR][1000 genomes]
rs72667878	1.00[EUR][1000 genomes]
rs72667890	0.92[EUR][1000 genomes]
rs72667893	0.92[EUR][1000 genomes]
rs72669719	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72669723	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669726	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669728	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461617	chr1:56055190-56123510	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv546303	chr1:56055190-56123510	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1014866	chr1:56059054-56129092	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56089000-56090400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:56089000-56104000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:56089400-56090200	Weak transcription	Ovary	ovary
4	chr1:56089400-56091800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:56089400-56092400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:56089600-56090600	Enhancers	Fetal Lung	lung
7	chr1:56089600-56091600	Weak transcription	Fetal Kidney	kidney
8	chr1:56089800-56090400	Enhancers	Fetal Stomach	stomach

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