Variant report

Variant	rs41419249
Chromosome Location	chr14:63309333-63309334
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10047851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10047852	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap]
rs10047856	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs10047884	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10047938	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs10130817	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10134277	0.88[EUR][1000 genomes]
rs10134985	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs10135128	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap]
rs10135421	0.85[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap]
rs10135862	0.92[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs10136167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10138498	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10139105	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs10139268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10139468	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10140008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10143260	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10143966	0.88[EUR][1000 genomes]
rs10145825	0.82[YRI][hapmap]
rs10146526	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10146673	1.00[CEU][hapmap]
rs10146879	0.92[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap]
rs10147931	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs10148076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10483757	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10483758	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[YRI][hapmap]
rs10483759	0.92[CEU][hapmap];0.90[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap]
rs10483760	0.92[CEU][hapmap]
rs10483762	0.90[CHB][hapmap];0.91[CHD][hapmap]
rs10873163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10873164	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs10873165	0.92[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs12100661	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12147279	0.94[CHB][hapmap];0.80[JPT][hapmap]
rs12586807	0.92[CEU][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.88[TSI][hapmap]
rs12587225	0.92[CEU][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];0.88[GIH][hapmap];0.81[JPT][hapmap];0.94[MEX][hapmap];0.81[TSI][hapmap]
rs12587258	0.92[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap]
rs12588293	0.90[CHB][hapmap]
rs12588552	0.90[CHB][hapmap];0.94[CHD][hapmap];0.81[JPT][hapmap];0.84[MEX][hapmap]
rs12588586	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs12589408	0.92[CEU][hapmap];0.84[MEX][hapmap]
rs12881527	0.90[CHB][hapmap];0.91[CHD][hapmap]
rs1543437	0.92[CEU][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap];0.94[MEX][hapmap];0.92[TSI][hapmap]
rs17100446	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17100497	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs17223580	0.82[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.94[MEX][hapmap];0.92[TSI][hapmap];0.85[YRI][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17223818	0.92[CEU][hapmap]
rs17223839	0.92[CEU][hapmap];0.89[MEX][hapmap];0.81[TSI][hapmap]
rs17223846	0.92[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap]
rs17823609	1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];0.85[JPT][hapmap];0.94[MEX][hapmap];0.96[TSI][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17823627	0.85[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap]
rs17823807	0.92[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap]
rs1950568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1956018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1956026	0.92[CEU][hapmap]
rs2355741	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap]
rs243163	0.85[CEU][hapmap]
rs2860089	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4146434	0.92[CEU][hapmap]
rs4146435	0.92[CEU][hapmap]
rs4270090	0.82[ASW][hapmap];0.92[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap]
rs4899096	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4899100	0.85[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.84[MEX][hapmap]
rs4902191	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs4902192	1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.90[GIH][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap]
rs4902193	0.92[CEU][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap]
rs6573462	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs7146868	0.90[CHB][hapmap];0.94[CHD][hapmap];0.81[JPT][hapmap];0.84[MEX][hapmap]
rs8004918	0.91[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap]
rs8005915	0.85[CEU][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];0.81[JPT][hapmap];0.84[MEX][hapmap]
rs8007782	0.92[CEU][hapmap]
rs8013931	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs8015097	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs9323421	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9323422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9888566	1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap]
rs9888605	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902015	chr14:63261862-63356253	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs41419249	C14orf39	cis	parietal	SCAN
rs41419249	SIX1	cis	cerebellum	SCAN
rs41419249	SYT16	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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