Variant report

Variant	rs10483762
Chromosome Location	chr14:63398018-63398019
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10047851	0.90[CHB][hapmap]
rs10047852	0.90[CHB][hapmap];0.91[CHD][hapmap]
rs10047856	0.90[CHB][hapmap];0.91[CHD][hapmap]
rs10047884	0.90[CHB][hapmap]
rs10047938	0.90[CHB][hapmap];0.91[CHD][hapmap]
rs10130817	0.90[CHB][hapmap]
rs10134277	0.82[ASN][1000 genomes]
rs10134985	0.93[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap]
rs10135128	1.00[CHB][hapmap]
rs10135421	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs10135862	1.00[CHB][hapmap]
rs10136167	0.90[CHB][hapmap]
rs10138498	0.90[CHB][hapmap]
rs10139105	0.89[CHB][hapmap]
rs10139268	0.89[CHB][hapmap]
rs10139468	0.89[CHB][hapmap]
rs10140008	0.90[CHB][hapmap]
rs10143966	0.82[ASN][1000 genomes]
rs10146526	0.90[CHB][hapmap]
rs10146879	1.00[CHB][hapmap]
rs10147931	0.89[CHB][hapmap]
rs10148076	0.90[CHB][hapmap]
rs10151264	0.85[ASN][1000 genomes]
rs10483757	0.90[CHB][hapmap]
rs10483758	0.90[CHB][hapmap]
rs10483759	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs10873163	0.90[CHB][hapmap]
rs10873164	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs10873165	1.00[CHB][hapmap]
rs11158459	1.00[CEU][hapmap]
rs11623063	1.00[CEU][hapmap];0.82[TSI][hapmap];0.92[EUR][1000 genomes]
rs11625796	0.96[CEU][hapmap];0.92[GIH][hapmap];0.83[TSI][hapmap];0.88[EUR][1000 genomes]
rs11628836	1.00[CEU][hapmap];0.83[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12100661	0.84[CHB][hapmap]
rs12147279	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs12431704	0.93[CEU][hapmap]
rs12586807	1.00[CHB][hapmap];0.91[CHD][hapmap]
rs12587225	0.95[CHB][hapmap];1.00[CHD][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs12587258	0.94[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs12588293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12588552	1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[JPT][hapmap]
rs12588586	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs12881527	0.86[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12881682	1.00[CEU][hapmap]
rs1543437	1.00[CHB][hapmap];0.91[CHD][hapmap]
rs17100446	0.90[CHB][hapmap]
rs17100497	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs17223580	1.00[CHB][hapmap];0.94[CHD][hapmap]
rs17223846	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs17823609	1.00[CHB][hapmap];0.94[CHD][hapmap];0.86[JPT][hapmap]
rs17823627	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs17823807	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs1950568	0.90[CHB][hapmap]
rs1950572	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1956018	0.90[CHB][hapmap]
rs1956024	1.00[CEU][hapmap]
rs1956027	0.85[CEU][hapmap];0.87[GIH][hapmap]
rs2144775	0.89[CEU][hapmap];0.82[ASN][1000 genomes]
rs2355741	0.90[CHB][hapmap];0.91[CHD][hapmap]
rs2356098	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2860089	0.90[CHB][hapmap]
rs41419249	0.90[CHB][hapmap];0.91[CHD][hapmap]
rs4270090	1.00[CHB][hapmap];0.94[CHD][hapmap]
rs4899096	0.90[CHB][hapmap]
rs4899100	1.00[CHB][hapmap];0.94[CHD][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs4902191	1.00[CHB][hapmap]
rs4902192	0.90[CHB][hapmap];0.86[CHD][hapmap]
rs4902193	1.00[CHB][hapmap];0.91[CHD][hapmap]
rs57087381	0.88[ASN][1000 genomes]
rs59454582	0.87[ASN][1000 genomes]
rs6573462	0.93[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap]
rs6573466	0.86[ASW][hapmap];1.00[CEU][hapmap];0.94[GIH][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6573467	1.00[CEU][hapmap];0.86[GIH][hapmap];0.89[TSI][hapmap];0.93[EUR][1000 genomes]
rs7146868	1.00[CHB][hapmap];0.94[CHD][hapmap];0.87[JPT][hapmap]
rs7155227	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs7155469	0.96[CEU][hapmap];0.95[GIH][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes]
rs7156354	0.96[CEU][hapmap];0.94[GIH][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes]
rs8004918	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs8005915	1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[JPT][hapmap]
rs8013931	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs8015097	0.93[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs8019236	1.00[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.91[YRI][hapmap]
rs9323421	0.88[CHB][hapmap]
rs9323422	0.90[CHB][hapmap]
rs9888566	1.00[CHB][hapmap];0.94[CHD][hapmap]
rs9888605	1.00[CHB][hapmap]
rs9972116	0.96[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10483762	SYT16	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63397600-63399800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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