Variant report

Variant	rs1956027
Chromosome Location	chr14:63364595-63364596
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10134985	0.92[CEU][hapmap]
rs10483762	0.85[CEU][hapmap];0.87[GIH][hapmap]
rs10873164	0.85[CEU][hapmap]
rs11158459	0.84[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap]
rs11623063	0.85[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs11625796	0.89[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.81[MEX][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11628836	0.85[CEU][hapmap]
rs12431704	0.92[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12431729	0.84[MEX][hapmap]
rs12588293	0.85[CEU][hapmap]
rs12881527	0.89[CEU][hapmap];0.90[GIH][hapmap];0.86[LWK][hapmap]
rs12881682	0.85[CEU][hapmap]
rs1950572	0.85[CEU][hapmap];0.87[GIH][hapmap]
rs1956024	0.85[CEU][hapmap]
rs2144775	0.82[CEU][hapmap]
rs243156	0.83[CHD][hapmap]
rs4146434	0.86[CHB][hapmap];0.92[CHD][hapmap]
rs4146435	0.86[CHB][hapmap]
rs6573462	0.92[CEU][hapmap];0.96[YRI][hapmap]
rs6573466	0.85[CEU][hapmap];0.82[GIH][hapmap]
rs6573467	0.85[CEU][hapmap];0.81[MEX][hapmap]
rs7155227	0.92[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7155469	0.89[CEU][hapmap];0.86[CHB][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.81[MEX][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7156354	0.88[CEU][hapmap];0.85[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.81[MEX][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8015097	0.92[CEU][hapmap];0.91[YRI][hapmap];0.88[EUR][1000 genomes]
rs8019236	0.85[CEU][hapmap]
rs9972116	0.89[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042953	chr14:63314591-63384260	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63362400-63365600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr14:63362600-63365200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr14:63362600-63365400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr14:63362600-63365600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr14:63362800-63365400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:63363000-63364600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr14:63363000-63365200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr14:63364000-63369200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr14:63364400-63364800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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