Variant report

Variant	rs11625796
Chromosome Location	chr14:63372471-63372472
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10134985	0.96[CEU][hapmap]
rs10150703	0.82[YRI][hapmap]
rs10483762	0.96[CEU][hapmap];0.92[GIH][hapmap];0.83[TSI][hapmap];0.88[EUR][1000 genomes]
rs10873164	0.96[CEU][hapmap]
rs11158459	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11623063	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.85[TSI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11628836	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs11846438	0.82[CHB][hapmap]
rs12431704	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12588293	0.96[CEU][hapmap]
rs12881527	1.00[CEU][hapmap];0.95[GIH][hapmap];0.89[TSI][hapmap];0.94[EUR][1000 genomes]
rs12881682	0.96[CEU][hapmap]
rs12883703	0.81[MEX][hapmap]
rs1950572	0.83[ASW][hapmap];0.96[CEU][hapmap];0.92[GIH][hapmap];0.84[TSI][hapmap]
rs1956024	0.96[CEU][hapmap]
rs1956027	0.89[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.81[MEX][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2144775	0.93[CEU][hapmap]
rs2356098	0.86[EUR][1000 genomes]
rs243155	0.83[CHB][hapmap]
rs243156	0.83[CHB][hapmap];0.88[CHD][hapmap]
rs243157	0.83[CHB][hapmap]
rs4146434	1.00[CHB][hapmap];0.97[CHD][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs4146435	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs6573462	0.96[CEU][hapmap]
rs6573466	0.96[CEU][hapmap];0.87[GIH][hapmap];0.83[TSI][hapmap]
rs6573467	0.83[ASW][hapmap];0.96[CEU][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7155227	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7155469	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7156354	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8015097	0.96[CEU][hapmap]
rs8019236	0.96[CEU][hapmap]
rs9972116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042953	chr14:63314591-63384260	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11625796	SYT16	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63372000-63372800	Enhancers	Fetal Heart	heart
2	chr14:63372000-63373200	Enhancers	Cortex derived primary cultured neurospheres	brain

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