Variant report

Variant	rs1950572
Chromosome Location	chr14:63392855-63392856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10134985	0.93[CEU][hapmap]
rs10483760	0.80[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs10483762	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10873164	0.92[CEU][hapmap]
rs11158459	1.00[CEU][hapmap]
rs11623063	1.00[CEU][hapmap];0.83[TSI][hapmap];0.92[EUR][1000 genomes]
rs11625796	0.83[ASW][hapmap];0.96[CEU][hapmap];0.92[GIH][hapmap];0.84[TSI][hapmap];0.89[EUR][1000 genomes]
rs11628836	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12431704	0.93[CEU][hapmap]
rs12588293	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs12589408	0.85[ASN][1000 genomes]
rs12881527	0.96[CEU][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12881682	1.00[CEU][hapmap]
rs17223818	0.94[CHB][hapmap];0.86[JPT][hapmap];0.96[ASN][1000 genomes]
rs17223839	0.85[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs1956024	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs1956027	0.85[CEU][hapmap];0.87[GIH][hapmap]
rs2144775	0.89[CEU][hapmap]
rs2356098	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6573462	0.93[CEU][hapmap]
rs6573466	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6573467	1.00[CEU][hapmap];0.86[GIH][hapmap];0.89[TSI][hapmap];0.92[EUR][1000 genomes]
rs7155227	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs7155469	0.83[ASW][hapmap];0.96[CEU][hapmap];0.94[GIH][hapmap];0.82[TSI][hapmap];0.88[EUR][1000 genomes]
rs7156354	0.83[ASW][hapmap];0.96[CEU][hapmap];0.94[GIH][hapmap];0.82[TSI][hapmap];0.88[EUR][1000 genomes]
rs8007782	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs8015097	0.93[CEU][hapmap]
rs8019236	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs9972116	0.96[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1950572	SYT16	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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