Variant report

Variant	rs441663
Chromosome Location	chr11:33139419-33139420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:33138621..33140759-chr11:33141891..33144623,2	K562	blood:
2	chr11:33133284..33135813-chr11:33138983..33141504,2	MCF-7	breast:

Extended variants
information (count: 198 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:162)

rs_ID	r²[population]
rs1026822	0.84[EUR][1000 genomes]
rs1028564	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1028663	0.95[CEU][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes]
rs10734415	0.95[CEU][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs10767987	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10767988	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10767989	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10767990	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10767992	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10767994	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10767995	0.96[ASN][1000 genomes]
rs10767998	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10767999	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10768001	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10768003	0.95[CEU][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.80[JPT][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap]
rs10836021	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10836022	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10836025	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10836026	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10836027	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10836028	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10836029	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10836034	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10836035	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10836036	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10836038	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10836039	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10836041	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10836046	0.95[CEU][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.85[EUR][1000 genomes]
rs10836049	0.91[CEU][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes]
rs11032175	0.83[ASN][1000 genomes]
rs11032190	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11032191	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11032193	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11032200	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11032201	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11032222	0.80[EUR][1000 genomes]
rs11600589	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11602835	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11605077	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11823640	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11825687	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12223070	0.82[CEU][hapmap]
rs12360582	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12798476	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12798873	0.82[EUR][1000 genomes]
rs12801128	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12801140	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12801185	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12805232	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1386183	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1407367	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1471851	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1610316	0.95[CEU][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs1679834	0.80[EUR][1000 genomes]
rs1967001	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1967061	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1979543	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1994367	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1994368	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1994369	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2025014	0.95[CEU][hapmap]
rs2065083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2078321	0.95[CEU][hapmap];0.81[JPT][hapmap];0.80[EUR][1000 genomes]
rs2087087	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2199917	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2199918	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2220287	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2420021	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2474868	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2474869	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2474870	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2475382	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs266461	0.95[CEU][hapmap]
rs267428	0.90[CEU][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.85[EUR][1000 genomes]
rs267435	0.87[CEU][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs267437	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs267439	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs267440	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs267442	0.95[CEU][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs267445	0.82[EUR][1000 genomes]
rs267451	0.95[CEU][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes]
rs3117541	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3117542	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3117652	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3117653	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3117654	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34143165	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs372754	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs373499	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3736213	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs373705	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs375376	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs380540	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs385132	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs394634	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs396518	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs397935	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs409516	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs414940	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs416097	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs422493	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4237680	0.95[CEU][hapmap];0.80[JPT][hapmap];0.80[EUR][1000 genomes]
rs425468	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs429439	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs444575	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs446679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs449444	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs450846	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755355	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4755361	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4756073	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4756074	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4756082	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4756083	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4756087	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4756090	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4756102	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4756104	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4756121	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4756136	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4756141	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4756143	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4756144	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5018639	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs590224	0.95[CEU][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs603088	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs638759	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6484644	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6484645	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6484647	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6484648	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7104129	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7113867	0.95[CEU][hapmap]
rs7114770	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7117228	0.84[EUR][1000 genomes]
rs7118056	0.96[ASN][1000 genomes]
rs7125136	0.83[ASN][1000 genomes]
rs7131287	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7394784	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7394794	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7395436	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7397000	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7482452	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7928487	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7929507	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7932999	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7936132	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7937448	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7938357	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7942407	0.80[EUR][1000 genomes]
rs7946185	0.96[ASN][1000 genomes]
rs7946222	0.80[ASN][1000 genomes]
rs7950763	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7951995	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs927177	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs927178	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs927179	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs932655	0.87[CEU][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9666540	0.95[CEU][hapmap]
rs9667072	0.95[CEU][hapmap]
rs9667141	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762904	chr11:32969258-33586535	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
2	nsv1041149	chr11:32981164-33496670	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv1053823	chr11:32981164-33533356	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
4	nsv897194	chr11:32993887-33471804	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
5	nsv1040572	chr11:33008191-33518964	Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
6	nsv540989	chr11:33008191-33518964	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
7	nsv1042860	chr11:33008191-33562490	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
8	nsv540990	chr11:33008191-33562490	Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
9	nsv533840	chr11:33008192-33595324	Bivalent Enhancer Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
10	nsv1051521	chr11:33008435-33239765	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
11	nsv540991	chr11:33008435-33239765	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
12	nsv1044478	chr11:33008435-33656273	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
13	nsv897195	chr11:33012493-33559186	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
14	nsv1053344	chr11:33028973-33499346	Bivalent Enhancer Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
15	nsv1046243	chr11:33043155-33439216	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
16	nsv540992	chr11:33043155-33439216	Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
17	nsv1050944	chr11:33043155-33656273	Flanking Active TSS Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
18	nsv540993	chr11:33043155-33656273	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
19	nsv529212	chr11:33053073-33641691	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
20	nsv869418	chr11:33053073-33662479	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
21	nsv467786	chr11:33065394-33476703	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
22	nsv553994	chr11:33065394-33476703	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
23	nsv521130	chr11:33068389-33602913	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
24	nsv1049756	chr11:33075082-33496670	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
25	nsv1053959	chr11:33075082-33565833	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
26	nsv540994	chr11:33075082-33565833	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
27	nsv897196	chr11:33106616-33152074	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
28	esv2761660	chr11:33114936-33486928	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
29	nsv897197	chr11:33116054-33150253	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
30	nsv1035618	chr11:33117833-33448457	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
31	nsv540995	chr11:33117833-33448457	Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
32	nsv897198	chr11:33118888-33156954	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
33	nsv897199	chr11:33118888-33170853	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
34	nsv1047667	chr11:33119875-33301210	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
35	nsv897200	chr11:33132864-33383085	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
36	nsv553995	chr11:33132864-33476703	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs441663	RAG1	cis	cerebellum	SCAN
rs441663	CSTF3	cis	cerebellum	SCAN

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33113600-33161800	Weak transcription	Left Ventricle	heart
2	chr11:33119200-33165000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:33122800-33144200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:33124000-33181800	Weak transcription	Esophagus	oesophagus
5	chr11:33124200-33146600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:33124200-33147000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:33124400-33143200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:33124600-33140200	Weak transcription	HUVEC	blood vessel
9	chr11:33124600-33143200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:33124600-33156400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:33124600-33163400	Weak transcription	Brain Anterior Caudate	brain
12	chr11:33126200-33156200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr11:33126200-33156200	Weak transcription	K562	blood
14	chr11:33126600-33160800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:33126800-33146800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr11:33126800-33155200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr11:33127200-33146800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:33127200-33147000	Weak transcription	Primary B cells from cord blood	blood
19	chr11:33127200-33147600	Weak transcription	Dnd41	blood
20	chr11:33127200-33155800	Weak transcription	NHDF-Ad	bronchial
21	chr11:33127200-33156800	Weak transcription	NH-A	brain
22	chr11:33127400-33146600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:33127400-33146600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr11:33127400-33146600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr11:33127400-33146600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:33127400-33159200	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr11:33127600-33140800	Weak transcription	Liver	Liver
28	chr11:33127600-33141000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:33127600-33146400	Weak transcription	HSMM	muscle
30	chr11:33127600-33155000	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr11:33127600-33161400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr11:33128400-33140600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:33129200-33146800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr11:33129200-33147200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr11:33129400-33146200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr11:33129400-33146600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr11:33129400-33146600	Weak transcription	Primary T cells from cord blood	blood
38	chr11:33129400-33146800	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr11:33129400-33147000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr11:33129400-33159600	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr11:33129400-33160800	Weak transcription	Placenta	Placenta
42	chr11:33129600-33143000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr11:33129600-33146400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr11:33129600-33146800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr11:33129600-33146800	Weak transcription	GM12878-XiMat	blood
46	chr11:33129600-33156200	Weak transcription	Osteobl	bone
47	chr11:33129600-33161800	Weak transcription	Fetal Thymus	thymus
48	chr11:33129800-33143200	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr11:33132000-33180200	Weak transcription	Small Intestine	intestine
50	chr11:33132200-33147200	Weak transcription	Fetal Intestine Small	intestine

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