Variant report

Variant	rs3736213
Chromosome Location	chr11:33183017-33183018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:33182775-33183398	HepG2	liver:	n/a	n/a
2	IRF1	chr11:33182792-33183367	K562	blood:	n/a	chr11:33183090-33183104 chr11:33182924-33182941
3	MYC	chr11:33181657-33183558	A549	lung:	n/a	chr11:33181939-33181948 chr11:33183091-33183101
4	NR2C2	chr11:33182706-33183342	HepG2	liver:	n/a	chr11:33183081-33183090
5	EGR1	chr11:33182732-33183151	GM12878	blood:	n/a	chr11:33183005-33183018 chr11:33183004-33183018 chr11:33183006-33183017 chr11:33183005-33183018 chr11:33183091-33183101 chr11:33183086-33183099 chr11:33183006-33183016 chr11:33183005-33183018 chr11:33183005-33183012 chr11:33183004-33183019
6	CTCF	chr11:33182880-33183030	GM12873	blood:	n/a	n/a
7	POLR2A	chr11:33182361-33183693	PFSK-1	brain:	n/a	n/a
8	CREB1	chr11:33182657-33183456	A549	lung:	n/a	chr11:33183171-33183184
9	CREB1	chr11:33182732-33183547	K562	blood:	n/a	chr11:33183171-33183184
10	YY1	chr11:33182558-33183387	ECC-1	luminal epithelium:	n/a	chr11:33183025-33183037 chr11:33183027-33183037
11	TAF1	chr11:33182475-33183529	A549	lung:	n/a	n/a
12	HDAC2	chr11:33182913-33183123	H1-hESC	embryonic stem cell:	n/a	chr11:33182917-33182931
13	CTCF	chr11:33183007-33183106	Fibrobl	skin:	n/a	n/a
14	ELF1	chr11:33182813-33183358	MCF-7	breast:	n/a	chr11:33183088-33183100 chr11:33183079-33183088 chr11:33183078-33183089
15	TAF7	chr11:33182658-33183385	H1-hESC	embryonic stem cell:	n/a	n/a
16	KAT2A	chr11:33182864-33183064	GM12878	blood:	n/a	n/a
17	EP300	chr11:33182949-33183342	T-47D	breast:	n/a	chr11:33183079-33183086
18	CHD2	chr11:33182795-33183468	GM12878	blood:	n/a	n/a
19	CTCF	chr11:33182960-33183110	NHEK	skin:	n/a	n/a
20	ARID3A	chr11:33182607-33183285	HepG2	liver:	n/a	n/a
21	MYC	chr11:33182663-33183195	HUVEC	blood vessel:	n/a	chr11:33183091-33183101
22	CTCF	chr11:33182760-33183030	GM12872	blood:	n/a	n/a
23	POLR2A	chr11:33182133-33183526	Hela-S3	cervix:	n/a	n/a
24	GABPA	chr11:33182742-33183346	HL-60	blood:	n/a	chr11:33183091-33183100
25	CTCF	chr11:33182960-33183110	AG09309	skin:	n/a	n/a
26	TAF1	chr11:33182845-33183361	PFSK-1	brain:	n/a	n/a
27	POLR2A	chr11:33182551-33183381	GM12892	blood:	n/a	n/a
28	CCNT2	chr11:33182817-33183333	K562	blood:	n/a	n/a
29	CEBPD	chr11:33182825-33183153	HepG2	liver:	n/a	n/a
30	YY1	chr11:33182669-33183333	GM12892	blood:	n/a	chr11:33183025-33183037 chr11:33183027-33183037
31	POLR2A	chr11:33182571-33183574	HUVEC	blood vessel:	n/a	n/a
32	POLR2A	chr11:33182681-33183466	U87	brain:	n/a	n/a
33	POLR2A	chr11:33182567-33183482	HUVEC	blood vessel:	n/a	n/a
34	GABPA	chr11:33182271-33183545	A549	lung:	n/a	chr11:33183091-33183100
35	CTCF	chr11:33182980-33183130	GM12870	blood:	n/a	n/a
36	POLR2A	chr11:33182717-33183388	Gliobla	brain:	n/a	n/a
37	NR2F2	chr11:33182474-33183589	K562	blood:	n/a	n/a
38	SP1	chr11:33182480-33183438	H1-hESC	embryonic stem cell:	n/a	chr11:33183152-33183161 chr11:33183090-33183102 chr11:33183091-33183101 chr11:33183090-33183102 chr11:33183087-33183101 chr11:33183150-33183161 chr11:33183150-33183162 chr11:33183091-33183101 chr11:33183091-33183100 chr11:33183092-33183101
39	FOXM1	chr11:33182599-33183400	GM12878	blood:	n/a	n/a
40	TAF1	chr11:33182751-33183223	GM12891	blood:	n/a	n/a
41	POLR2A	chr11:33182661-33183336	SK-N-SH	brain:	n/a	n/a
42	POLR2A	chr11:33182761-33183407	A549	lung:	n/a	n/a
43	CHD2	chr11:33182805-33183637	H1-hESC	embryonic stem cell:	n/a	n/a
44	CTCF	chr11:33182940-33183090	HepG2	liver:	n/a	n/a
45	POU2F2	chr11:33182808-33183152	GM12878	blood:	n/a	chr11:33182965-33182977
46	TEAD4	chr11:33182377-33183707	K562	blood:	n/a	n/a
47	GABPA	chr11:33182837-33183268	H1-hESC	embryonic stem cell:	n/a	chr11:33183091-33183100
48	POLR2A	chr11:33182628-33183389	GM12891	blood:	n/a	n/a
49	POLR2A	chr11:33182682-33183331	GM12891	blood:	n/a	n/a
50	CTCF	chr11:33182960-33183110	GM12873	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:33183001-33183051	NB4	blood:	n/a
2	chr11:33183001-33183051	HCT-116	colon:	n/a
3	chr11:33183001-33183051	GM12892	blood:	n/a
4	chr11:33183001-33183051	HIPEpiC	eye:	n/a
5	chr11:33183001-33183051	HCPEpiC	choroid plexus:	n/a
6	chr11:33183001-33183051	HepG2	liver:	n/a
7	chr11:33183001-33183051	HEEpiC	esophagus:	n/a
8	chr11:33183001-33183051	AG10803	skin:	n/a
9	chr11:33183001-33183051	GM06990	blood:	n/a
10	chr11:33183001-33183051	ProgFib	skin:	n/a
11	chr11:33183001-33183051	HCM	heart:	n/a
12	chr11:33183001-33183051	SAEC	small airway:	n/a
13	chr11:33183001-33183051	CMK	blood:	n/a
14	chr11:33183001-33183051	U87	brain:	n/a
15	chr11:33183001-33183051	SK-N-SH	brain:	n/a
16	chr11:33183001-33183051	NT2-D1	testis:	n/a
17	chr11:33183001-33183051	ovcar-3	ovarian:	n/a
18	chr11:33183001-33183051	Hepatocyte	liver:	n/a
19	chr11:33183001-33183051	AG04449	skin:	fetal
20	chr11:33183001-33183051	IMR90	lung:	fetal
21	chr11:33183001-33183051	HNPCEpiC	eye:	n/a
22	chr11:33183001-33183051	Caco-2	colon:	n/a
23	chr11:33183001-33183051	HRCEpiC	kidney:	n/a
24	chr11:33183001-33183051	HAEpiC	amniotic membrane:	n/a
25	chr11:33183001-33183051	SK-N-SH_RA	brain:	n/a
26	chr11:33183001-33183051	LNCaP	prostate:	n/a
27	chr11:33183001-33183051	Jurkat	blood:	n/a
28	chr11:33183001-33183051	RPTEC	kidney:	n/a
29	chr11:33183001-33183051	GM19239	blood:	n/a
30	chr11:33183001-33183051	K562	blood:	n/a
31	chr11:33183001-33183051	AG09309	skin:	n/a
32	chr11:33183001-33183051	HRE	kidney:	n/a
33	chr11:33183001-33183051	A549	lung:	n/a
34	chr11:33183001-33183051	AoSMC	blood vessel:	n/a
35	chr11:33183001-33183051	NH-A	brain:	n/a
36	chr11:33183001-33183051	PrEC	prostate:	n/a
37	chr11:33183001-33183051	GM12878	blood:	n/a
38	chr11:33183001-33183051	HCF	heart:	n/a
39	chr11:33183001-33183051	NHDF-neo	bronchial:	n/a
40	chr11:33183001-33183051	SK-N-MC	brain:	n/a
41	chr11:33183001-33183051	HRPEpiC	eye:	n/a
42	chr11:33183001-33183051	H1-hESC	embryonic stem cell:	embryo
43	chr11:33183001-33183051	ECC-1	luminal epithelium:	n/a
44	chr11:33183001-33183051	HMEC	breast:	n/a
45	chr11:33183001-33183051	HUVEC	blood vessel:	n/a
46	chr11:33183001-33183051	PANC-1	pancreas:	n/a
47	chr11:33183001-33183051	BJ	skin:	n/a
48	chr11:33183001-33183051	HEK293	kidney:	embryo
49	chr11:33183001-33183051	PFSK-1	brain:	n/a
50	chr11:33183001-33183051	NHBE	bronchial:	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:33107195..33109428-chr11:33181962..33183514,2	K562	blood:
2	chr11:33182587..33183464-chr17:79827983..79828974,2	Hela-S3	cervix:
3	chr11:33180418..33183694-chr11:33278346..33281012,5	MCF-7	breast:
4	chr11:32913171..32916144-chr11:33182605..33184521,3	K562	blood:
5	chr11:33180160..33183951-chr11:33277482..33283147,16	K562	blood:
6	chr11:797886..798445-chr11:33182179..33183133,2	HCT-116	colon:
7	chr11:32911083..32916400-chr11:33180278..33184105,5	K562	blood:
8	chr11:33181657..33184341-chr11:33279051..33282180,3	MCF-7	breast:
9	chr11:33180160..33185398-chr11:33277230..33283289,14	K562	blood:
10	chr11:33182274..33183032-chr3:52007563..52008447,2	Hela-S3	cervix:
11	chr11:33181954..33184910-chr11:33755905..33758961,3	K562	blood:
12	chr11:33182577..33183118-chr15:64387933..64388627,2	Hela-S3	cervix:
13	chr11:33182326..33183217-chr11:33278148..33279535,3	Hela-S3	cervix:

Variant related genes	Relation type
CSTF3	TF binding region
CSTF3-AS1	TF binding region
CSTF3	CpG island
CSTF3-AS1	CpG island
ENSG00000177542	Chromatin interaction
ENSG00000114779	Chromatin interaction
ENSG00000028528	Chromatin interaction
ENSG00000176102	Chromatin interaction
ENSG00000085063	Chromatin interaction
ENSG00000110422	Chromatin interaction
ENSG00000141522	Chromatin interaction
ENSG00000248487	Chromatin interaction
ENSG00000060749	Chromatin interaction
ENSG00000272762	Chromatin interaction

Extended variants
information (count: 204 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:168)

rs_ID	r²[population]
rs1028564	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1028663	0.83[CEU][hapmap];0.85[JPT][hapmap]
rs10600	0.94[CHD][hapmap];0.91[GIH][hapmap];0.80[JPT][hapmap]
rs10734415	0.83[CEU][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];0.91[MEX][hapmap]
rs10767987	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10767988	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10767989	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10767990	0.98[ASN][1000 genomes]
rs10767992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10767994	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10767995	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10767998	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10767999	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10768001	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10768003	0.83[CEU][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.80[JPT][hapmap];0.86[MEX][hapmap]
rs10836021	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10836022	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10836025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10836026	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10836027	0.92[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10836028	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10836029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10836034	0.90[ASN][1000 genomes]
rs10836035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10836036	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10836038	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10836039	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10836041	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10836045	0.83[AMR][1000 genomes]
rs10836046	0.83[CEU][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];0.91[MEX][hapmap]
rs10836049	0.95[CHD][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];0.91[MEX][hapmap]
rs10836051	0.95[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs11032175	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11032190	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11032191	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11032193	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11032200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11032201	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11032230	0.83[CEU][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];0.86[MEX][hapmap]
rs11600589	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11602835	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11605077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11823640	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11825687	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12223070	0.95[CEU][hapmap]
rs12360582	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12798476	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12801128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12801140	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12801185	0.83[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12805232	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1386183	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1407367	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1471851	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1610316	0.83[CEU][hapmap];0.81[JPT][hapmap]
rs1967001	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1967061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1979543	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1994367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1994368	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1994369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2025014	0.82[CEU][hapmap]
rs2065083	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2078321	0.86[CEU][hapmap];0.81[JPT][hapmap]
rs2087087	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2199917	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2199918	0.80[ASN][1000 genomes]
rs2220287	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2420021	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2474868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2474869	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2474870	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2475382	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs266457	0.95[CHD][hapmap];0.98[GIH][hapmap];0.80[JPT][hapmap];0.81[MEX][hapmap]
rs266461	0.82[CEU][hapmap]
rs266470	0.83[CEU][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];0.86[MEX][hapmap]
rs266476	0.83[CEU][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.80[JPT][hapmap];0.91[MEX][hapmap]
rs266485	0.83[CEU][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.91[MEX][hapmap]
rs267428	0.97[CHD][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];0.90[MEX][hapmap]
rs267435	0.81[JPT][hapmap]
rs267437	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs267439	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs267440	0.87[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs267442	0.83[CEU][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.85[JPT][hapmap];0.91[MEX][hapmap]
rs267451	0.83[CEU][hapmap];0.85[JPT][hapmap]
rs3117541	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3117542	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3117652	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3117653	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3117654	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3117655	0.89[LWK][hapmap]
rs34143165	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs372754	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs373499	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs373705	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs375376	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs380540	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3847592	0.95[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs385132	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3903400	0.83[CEU][hapmap];0.81[JPT][hapmap]
rs394634	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs396518	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs397935	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs409516	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs414940	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs416097	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs422493	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4237680	0.83[CEU][hapmap];0.80[JPT][hapmap]
rs425468	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs426194	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs429439	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs441663	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs444575	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs446679	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs449444	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs450846	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4755355	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4755361	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4756073	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4756074	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4756082	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4756083	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4756087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4756090	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4756102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4756104	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4756121	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4756136	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4756141	0.87[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4756143	0.87[ASN][1000 genomes]
rs4756144	0.91[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5018639	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs590224	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs603088	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs638759	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6484644	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.95[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6484645	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6484647	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6484648	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67433468	0.84[AMR][1000 genomes]
rs7104129	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7113867	0.83[CEU][hapmap]
rs7114770	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7118056	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7125136	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7131287	0.87[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs7394784	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7394794	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7395436	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7397000	0.81[ASN][1000 genomes]
rs7482452	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7928487	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7929507	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7932999	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7936132	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7937448	0.88[ASN][1000 genomes]
rs7938357	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7946185	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7946222	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7950763	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7951995	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs927177	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs927178	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs927179	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs932655	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9666540	0.82[CEU][hapmap]
rs9667072	0.83[CEU][hapmap]
rs9667141	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762904	chr11:32969258-33586535	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
2	nsv1041149	chr11:32981164-33496670	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv1053823	chr11:32981164-33533356	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
4	nsv897194	chr11:32993887-33471804	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
5	nsv1040572	chr11:33008191-33518964	Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
6	nsv540989	chr11:33008191-33518964	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
7	nsv1042860	chr11:33008191-33562490	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
8	nsv540990	chr11:33008191-33562490	Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
9	nsv533840	chr11:33008192-33595324	Bivalent Enhancer Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
10	nsv1051521	chr11:33008435-33239765	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
11	nsv540991	chr11:33008435-33239765	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
12	nsv1044478	chr11:33008435-33656273	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
13	nsv897195	chr11:33012493-33559186	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
14	nsv1053344	chr11:33028973-33499346	Bivalent Enhancer Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
15	nsv1046243	chr11:33043155-33439216	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
16	nsv540992	chr11:33043155-33439216	Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
17	nsv1050944	chr11:33043155-33656273	Flanking Active TSS Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
18	nsv540993	chr11:33043155-33656273	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
19	nsv529212	chr11:33053073-33641691	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
20	nsv869418	chr11:33053073-33662479	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
21	nsv467786	chr11:33065394-33476703	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
22	nsv553994	chr11:33065394-33476703	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
23	nsv521130	chr11:33068389-33602913	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
24	nsv1049756	chr11:33075082-33496670	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
25	nsv1053959	chr11:33075082-33565833	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
26	nsv540994	chr11:33075082-33565833	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
27	esv2761660	chr11:33114936-33486928	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
28	nsv1035618	chr11:33117833-33448457	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
29	nsv540995	chr11:33117833-33448457	Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
30	nsv1047667	chr11:33119875-33301210	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
31	nsv897200	chr11:33132864-33383085	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
32	nsv553995	chr11:33132864-33476703	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
33	nsv1038920	chr11:33142058-33482973	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
34	nsv897201	chr11:33154678-33370884	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
35	nsv1036238	chr11:33162914-33460303	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
36	nsv540996	chr11:33162914-33460303	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3736213	RAG1	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33178000-33184800	Active TSS	GM12878-XiMat	blood
2	chr11:33180000-33183600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:33180000-33183600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:33180400-33183200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:33180600-33183800	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr11:33180600-33184000	Active TSS	H9 Cell Line	embryonic stem cell
7	chr11:33180800-33183200	Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr11:33180800-33183400	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr11:33180800-33183400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:33180800-33183600	Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr11:33180800-33183600	Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr11:33180800-33183800	Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr11:33180800-33183800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:33180800-33184000	Active TSS	A549	lung
15	chr11:33181000-33183200	Active TSS	Muscle Satellite Cultured Cells	--
16	chr11:33181000-33183200	Active TSS	K562	blood
17	chr11:33181000-33183600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:33181200-33183200	Active TSS	Rectal Smooth Muscle	rectum
19	chr11:33181200-33183200	Active TSS	NH-A	brain
20	chr11:33181200-33183400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr11:33181200-33183400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:33181200-33183400	Active TSS	Fetal Kidney	kidney
23	chr11:33181200-33183400	Active TSS	Lung	lung
24	chr11:33181200-33183600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:33181200-33183600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr11:33181200-33183600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
27	chr11:33181200-33183800	Active TSS	Brain Angular Gyrus	brain
28	chr11:33181400-33183200	Active TSS	Liver	Liver
29	chr11:33181400-33183200	Active TSS	Fetal Intestine Large	intestine
30	chr11:33181400-33183200	Active TSS	Fetal Intestine Small	intestine
31	chr11:33181400-33183200	Active TSS	Fetal Muscle Leg	muscle
32	chr11:33181400-33183200	Active TSS	Hela-S3	cervix
33	chr11:33181400-33183200	Active TSS	HMEC	breast
34	chr11:33181400-33183200	Active TSS	NHDF-Ad	bronchial
35	chr11:33181400-33183400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:33181400-33183400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:33181400-33183400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:33181400-33183400	Active TSS	Brain Germinal Matrix	brain
39	chr11:33181400-33183400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr11:33181400-33183400	Active TSS	Fetal Brain Female	brain
41	chr11:33181400-33183400	Active TSS	Pancreatic Islets	Pancreatic Islet
42	chr11:33181400-33183400	Active TSS	Pancreas	Pancrea
43	chr11:33181400-33183400	Active TSS	Psoas Muscle	Psoas
44	chr11:33181400-33183400	Active TSS	Right Ventricle	heart
45	chr11:33181400-33183400	Active TSS	HSMM	muscle
46	chr11:33181400-33183600	Active TSS	H1 Cell Line	embryonic stem cell
47	chr11:33181400-33183600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr11:33181400-33183600	Active TSS	Breast Myoepithelial Primary Cells	Breast
49	chr11:33181400-33183600	Active TSS	Right Atrium	heart
50	chr11:33181400-33183800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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