Variant report

Variant	rs3847592
Chromosome Location	chr11:33360783-33360784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:33360349..33362095-chr11:33370787..33373728,2	MCF-7	breast:
2	chr11:33360581..33362754-chr11:33365388..33367285,2	K562	blood:

Extended variants
information (count: 132 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs1028564	0.95[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs1028663	0.91[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs10600	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10734415	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10742293	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10767992	0.96[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs10767994	0.96[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs10767995	0.81[AMR][1000 genomes]
rs10768003	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10836025	0.96[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs10836026	0.95[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs10836027	0.87[CEU][hapmap];1.00[YRI][hapmap]
rs10836028	0.95[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs10836035	0.96[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs10836039	0.95[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs10836045	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10836046	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10836047	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10836049	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10836051	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032200	0.96[CEU][hapmap];0.81[JPT][hapmap];0.93[YRI][hapmap]
rs11032213	0.82[ASN][1000 genomes]
rs11032214	0.82[ASN][1000 genomes]
rs11032222	0.90[ASN][1000 genomes]
rs11032223	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11032227	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032230	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605077	0.95[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs11825445	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12223070	0.95[CEU][hapmap]
rs12360582	0.95[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs12418231	0.82[ASN][1000 genomes]
rs12798873	0.83[ASN][1000 genomes]
rs12801185	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs1386183	0.96[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs1407367	0.95[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs1610316	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1679834	0.85[ASN][1000 genomes]
rs1994368	0.81[AMR][1000 genomes]
rs1994369	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs1998398	0.82[ASN][1000 genomes]
rs2025013	0.94[ASN][1000 genomes]
rs2025014	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2065083	0.87[CEU][hapmap];0.82[JPT][hapmap]
rs2078321	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2220287	0.81[AMR][1000 genomes]
rs2420021	0.91[CEU][hapmap];0.81[JPT][hapmap]
rs2474948	0.95[ASN][1000 genomes]
rs266454	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs266457	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs266458	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs266461	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs266465	0.91[ASN][1000 genomes]
rs266467	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs266469	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs266470	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs266476	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs266485	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs267428	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs267435	0.89[CHB][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs267440	0.87[CEU][hapmap];0.94[JPT][hapmap]
rs267442	0.91[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs267451	0.91[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs3736213	0.95[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs3847594	0.97[ASN][1000 genomes]
rs3847595	0.83[ASN][1000 genomes]
rs3903400	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3908395	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4237680	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs426194	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755355	0.81[AMR][1000 genomes]
rs4755566	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756141	0.87[CEU][hapmap];0.94[JPT][hapmap]
rs4756144	0.91[CEU][hapmap];0.94[JPT][hapmap]
rs590224	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs638759	0.86[CEU][hapmap];0.93[JPT][hapmap]
rs6484653	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67433468	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7113867	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7118056	0.83[AMR][1000 genomes]
rs7131287	0.87[CEU][hapmap];0.94[JPT][hapmap]
rs7928487	0.95[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs7942407	0.88[ASN][1000 genomes]
rs7946185	0.83[AMR][1000 genomes]
rs7946222	0.82[AMR][1000 genomes]
rs7951995	0.95[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs932655	0.96[CEU][hapmap]
rs9630170	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9666540	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9667072	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:42 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762904	chr11:32969258-33586535	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
2	nsv1041149	chr11:32981164-33496670	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv1053823	chr11:32981164-33533356	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
4	nsv897194	chr11:32993887-33471804	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
5	nsv1040572	chr11:33008191-33518964	Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
6	nsv540989	chr11:33008191-33518964	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
7	nsv1042860	chr11:33008191-33562490	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
8	nsv540990	chr11:33008191-33562490	Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
9	nsv533840	chr11:33008192-33595324	Bivalent Enhancer Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
10	nsv1044478	chr11:33008435-33656273	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
11	nsv897195	chr11:33012493-33559186	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
12	nsv1053344	chr11:33028973-33499346	Bivalent Enhancer Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
13	nsv1046243	chr11:33043155-33439216	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
14	nsv540992	chr11:33043155-33439216	Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
15	nsv1050944	chr11:33043155-33656273	Flanking Active TSS Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
16	nsv540993	chr11:33043155-33656273	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
17	nsv529212	chr11:33053073-33641691	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
18	nsv869418	chr11:33053073-33662479	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
19	nsv467786	chr11:33065394-33476703	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
20	nsv553994	chr11:33065394-33476703	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
21	nsv521130	chr11:33068389-33602913	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
22	nsv1049756	chr11:33075082-33496670	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
23	nsv1053959	chr11:33075082-33565833	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
24	nsv540994	chr11:33075082-33565833	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
25	esv2761660	chr11:33114936-33486928	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
26	nsv1035618	chr11:33117833-33448457	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
27	nsv540995	chr11:33117833-33448457	Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
28	nsv897200	chr11:33132864-33383085	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
29	nsv553995	chr11:33132864-33476703	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
30	nsv1038920	chr11:33142058-33482973	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
31	nsv897201	chr11:33154678-33370884	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
32	nsv1036238	chr11:33162914-33460303	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
33	nsv540996	chr11:33162914-33460303	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
34	nsv430370	chr11:33202614-33505494	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
35	nsv897202	chr11:33211190-33428255	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
36	nsv1041680	chr11:33249367-33637249	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
37	nsv540997	chr11:33249367-33637249	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
38	nsv1051437	chr11:33290261-33488949	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
39	nsv1054720	chr11:33313368-33401791	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
40	nsv832110	chr11:33329586-33497555	Bivalent/Poised TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
41	nsv1045088	chr11:33331237-33560445	Strong transcription Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
42	nsv1039217	chr11:33341724-33473614	Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3847592	TCP11L1	cis	Muscle Skeletal	GTEx

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33320600-33369400	Weak transcription	Fetal Brain Male	brain
2	chr11:33332200-33360800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr11:33339600-33361200	Weak transcription	HUVEC	blood vessel
4	chr11:33339600-33362000	Weak transcription	HMEC	breast
5	chr11:33342200-33361200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr11:33342400-33361800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr11:33342800-33370000	Weak transcription	Fetal Kidney	kidney
8	chr11:33342800-33376800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:33343400-33363000	Weak transcription	K562	blood
10	chr11:33345800-33369000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr11:33346200-33361000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr11:33346200-33362600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:33346400-33361000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr11:33346400-33361200	Weak transcription	Lung	lung
15	chr11:33346400-33361400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr11:33346400-33361600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:33346400-33361600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr11:33346400-33361600	Weak transcription	Esophagus	oesophagus
19	chr11:33346400-33361600	Weak transcription	Gastric	stomach
20	chr11:33346400-33361600	Weak transcription	Pancreas	Pancrea
21	chr11:33346400-33361600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr11:33346400-33361600	Weak transcription	Spleen	Spleen
23	chr11:33346400-33362600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:33346400-33363000	Weak transcription	Aorta	Aorta
25	chr11:33346400-33368400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:33346400-33369400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr11:33346600-33361000	Weak transcription	Fetal Lung	lung
28	chr11:33346600-33361600	Weak transcription	Right Ventricle	heart
29	chr11:33348400-33361600	Weak transcription	Ovary	ovary
30	chr11:33348600-33361200	Weak transcription	Small Intestine	intestine
31	chr11:33349000-33363000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:33349000-33368400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr11:33349600-33374600	Weak transcription	Brain Angular Gyrus	brain
34	chr11:33350000-33361000	Weak transcription	NHLF	lung
35	chr11:33351000-33361200	Weak transcription	Fetal Brain Female	brain
36	chr11:33351400-33360800	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr11:33351400-33361200	Weak transcription	Colon Smooth Muscle	Colon
38	chr11:33351400-33370200	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr11:33351400-33376600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr11:33352000-33362600	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr11:33353600-33361600	Weak transcription	Fetal Stomach	stomach
42	chr11:33353600-33363000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr11:33353600-33369400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr11:33353800-33361000	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr11:33353800-33363400	Weak transcription	NHEK	skin
46	chr11:33353800-33370200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr11:33354600-33374600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr11:33354800-33361200	Weak transcription	Fetal Muscle Leg	muscle
49	chr11:33355000-33360800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr11:33355000-33361200	Weak transcription	Left Ventricle	heart

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