Variant report

Variant	rs4424865
Chromosome Location	chr15:57138339-57138340
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10518872	0.82[AMR][1000 genomes]
rs12437635	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12437714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12437735	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs12437753	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12437777	1.00[AFR][1000 genomes]
rs12438377	0.93[AMR][1000 genomes]
rs12438464	1.00[AFR][1000 genomes]
rs12438572	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12439010	1.00[AFR][1000 genomes]
rs12439116	0.80[AMR][1000 genomes]
rs12439149	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12439165	1.00[AFR][1000 genomes]
rs12439547	1.00[AFR][1000 genomes]
rs12439697	0.91[AMR][1000 genomes]
rs12439994	1.00[AFR][1000 genomes]
rs12440245	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12440725	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12440790	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12440891	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12441185	0.84[EUR][1000 genomes]
rs12441200	0.84[EUR][1000 genomes]
rs12441263	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12441769	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs12441792	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12441888	1.00[AFR][1000 genomes]
rs12442069	0.93[AMR][1000 genomes]
rs12442238	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12442326	1.00[AFR][1000 genomes]
rs12442630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12442642	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12442662	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12442839	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12443125	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12443178	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs12903143	0.84[AMR][1000 genomes]
rs1364541	0.86[AMR][1000 genomes]
rs1529597	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs1631905	0.85[AMR][1000 genomes]
rs1647386	0.91[AMR][1000 genomes]
rs1647391	0.88[AMR][1000 genomes]
rs16977123	0.93[AMR][1000 genomes]
rs17238880	1.00[AFR][1000 genomes]
rs17238894	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs17238901	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs17238950	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17238971	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs17238992	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17239020	1.00[AFR][1000 genomes]
rs17239047	1.00[AFR][1000 genomes]
rs17239068	1.00[AFR][1000 genomes]
rs17239089	1.00[AFR][1000 genomes]
rs17819592	1.00[AFR][1000 genomes]
rs17819616	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs17819646	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17819658	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17819664	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17819694	1.00[AFR][1000 genomes]
rs17819755	1.00[AFR][1000 genomes]
rs17819779	1.00[AFR][1000 genomes]
rs17819809	1.00[AFR][1000 genomes]
rs1816322	1.00[AFR][1000 genomes]
rs1834199	0.82[AMR][1000 genomes]
rs2052641	0.83[AMR][1000 genomes]
rs2161935	0.80[AMR][1000 genomes]
rs2899599	0.83[AMR][1000 genomes]
rs4287503	0.86[AMR][1000 genomes]
rs4362334	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6493888	0.83[AMR][1000 genomes]
rs7176472	0.80[AMR][1000 genomes]
rs74015901	0.80[AMR][1000 genomes]
rs966807	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv827344	chr15:57132604-57139103	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57110000-57138600	Weak transcription	Left Ventricle	heart
2	chr15:57125400-57140400	Weak transcription	Brain Angular Gyrus	brain
3	chr15:57125400-57141000	Weak transcription	Fetal Lung	lung
4	chr15:57125400-57141000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr15:57128200-57140400	Weak transcription	Brain Anterior Caudate	brain
6	chr15:57128200-57158600	Weak transcription	Ovary	ovary
7	chr15:57128400-57140000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr15:57128400-57140400	Weak transcription	Right Ventricle	heart
9	chr15:57129400-57142600	Weak transcription	Fetal Muscle Leg	muscle
10	chr15:57131000-57141000	Weak transcription	Adipose Nuclei	Adipose
11	chr15:57135400-57164000	Weak transcription	Aorta	Aorta
12	chr15:57137200-57145600	Weak transcription	Fetal Intestine Small	intestine
13	chr15:57137400-57142200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:57138000-57140400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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