Variant report

Variant	rs12441792
Chromosome Location	chr15:57089279-57089280
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10518872	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs11071285	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12437635	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12437714	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12437735	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12437753	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12438377	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12438572	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12438728	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12439116	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12439149	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs12439165	1.00[AFR][1000 genomes]
rs12439547	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs12439563	0.84[EUR][1000 genomes]
rs12439697	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12439994	1.00[AFR][1000 genomes]
rs12440006	0.84[EUR][1000 genomes]
rs12440245	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12440725	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12440790	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs12440891	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12441200	1.00[CEU][hapmap]
rs12441263	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs12441769	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12442069	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12442238	1.00[AFR][1000 genomes]
rs12442630	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12442642	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12442662	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12442839	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12443125	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12443178	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12903143	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12907983	0.84[EUR][1000 genomes]
rs1364541	0.93[AMR][1000 genomes]
rs1529597	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs1564557	1.00[CEU][hapmap]
rs1600829	0.84[EUR][1000 genomes]
rs1631905	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1647386	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1647391	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16977123	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16977170	1.00[CEU][hapmap]
rs17238880	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs17238894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17238901	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17238950	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17238971	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs17238992	1.00[AFR][1000 genomes]
rs17239020	1.00[AFR][1000 genomes]
rs17239047	1.00[AFR][1000 genomes]
rs17819592	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17819616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17819646	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs17819658	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17819664	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17819694	1.00[AFR][1000 genomes]
rs1834199	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2052641	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2161935	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs2899599	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs4287503	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4362334	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4424865	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4774885	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs480701	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs6493888	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7176472	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs74015901	0.87[AMR][1000 genomes]
rs966807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57086000-57091000	Weak transcription	Left Ventricle	heart
2	chr15:57086800-57091000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr15:57087200-57091000	Weak transcription	Aorta	Aorta
4	chr15:57087200-57096200	Weak transcription	HSMM	muscle
5	chr15:57087600-57090800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr15:57087800-57091000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr15:57088000-57097800	Weak transcription	Adipose Nuclei	Adipose
8	chr15:57089200-57090400	Enhancers	Fetal Lung	lung

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