Variant report

Variant	rs74015901
Chromosome Location	chr15:57019856-57019857
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56782685..56785505-chr15:57019755..57021681,2	K562	blood:
2	chr15:57009099..57010874-chr15:57018906..57020561,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10518872	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1087705	0.88[EUR][1000 genomes]
rs11071285	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11071286	0.82[AMR][1000 genomes]
rs12437714	0.80[AMR][1000 genomes]
rs12437735	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12438377	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12438728	0.94[EUR][1000 genomes]
rs12439116	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12439563	0.94[EUR][1000 genomes]
rs12439586	0.88[EUR][1000 genomes]
rs12439697	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12440006	0.94[EUR][1000 genomes]
rs12441746	0.89[EUR][1000 genomes]
rs12441769	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12441792	0.87[AMR][1000 genomes]
rs12442069	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12442630	0.80[AMR][1000 genomes]
rs12443178	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12903143	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12907983	0.94[EUR][1000 genomes]
rs1364541	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1564557	0.81[EUR][1000 genomes]
rs1586022	0.83[EUR][1000 genomes]
rs1600829	0.94[EUR][1000 genomes]
rs1600831	0.89[EUR][1000 genomes]
rs1631905	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1647386	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1647391	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16977123	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17238859	0.82[EUR][1000 genomes]
rs17238880	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17238894	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17238901	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17819592	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17819616	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1834199	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2052641	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2161935	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2170461	0.83[EUR][1000 genomes]
rs2170462	0.88[EUR][1000 genomes]
rs2459565	0.88[EUR][1000 genomes]
rs2676178	0.88[EUR][1000 genomes]
rs2676181	0.88[EUR][1000 genomes]
rs2733231	0.83[EUR][1000 genomes]
rs2899599	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4287503	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4424865	0.80[AMR][1000 genomes]
rs4594195	0.83[EUR][1000 genomes]
rs4774869	0.83[EUR][1000 genomes]
rs4774885	0.94[EUR][1000 genomes]
rs480701	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6493888	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7176472	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8029710	0.85[EUR][1000 genomes]
rs966807	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56971000-57023400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:56992400-57021800	Weak transcription	Right Ventricle	heart
3	chr15:56992600-57022600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr15:56993000-57024000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr15:56993400-57021600	Weak transcription	Fetal Brain Male	brain
6	chr15:56994000-57023800	Weak transcription	Fetal Kidney	kidney
7	chr15:56995800-57022200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr15:56996000-57021800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr15:56996400-57021600	Weak transcription	HSMMtube	muscle
10	chr15:56996400-57022600	Weak transcription	NH-A	brain
11	chr15:56996800-57022600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:56997200-57022800	Weak transcription	Gastric	stomach
13	chr15:56997200-57023800	Weak transcription	Fetal Stomach	stomach
14	chr15:56998400-57021200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr15:56998800-57021800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr15:56998800-57023400	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr15:56998800-57023800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr15:56999400-57023400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:57009200-57021400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr15:57009400-57022800	Weak transcription	Right Atrium	heart
21	chr15:57009400-57024400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr15:57011000-57022200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr15:57011200-57022600	Weak transcription	Fetal Heart	heart
24	chr15:57011400-57021200	Weak transcription	Brain Substantia Nigra	brain
25	chr15:57011400-57021400	Weak transcription	Adipose Nuclei	Adipose
26	chr15:57011400-57021800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr15:57011600-57021000	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr15:57011600-57022600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr15:57011600-57023400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr15:57011600-57024400	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr15:57011600-57024400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:57011800-57022600	Weak transcription	HMEC	breast
33	chr15:57011800-57024000	Weak transcription	Aorta	Aorta
34	chr15:57012400-57022600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr15:57012400-57022600	Weak transcription	Osteobl	bone
36	chr15:57012400-57025000	Weak transcription	Spleen	Spleen
37	chr15:57012600-57022600	Weak transcription	NHEK	skin
38	chr15:57012600-57023000	Weak transcription	NHLF	lung
39	chr15:57012600-57023400	Weak transcription	Psoas Muscle	Psoas
40	chr15:57013000-57022800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr15:57013200-57022600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr15:57013400-57024200	Weak transcription	Ovary	ovary
43	chr15:57014000-57022400	Weak transcription	Brain Germinal Matrix	brain
44	chr15:57014200-57022800	Weak transcription	K562	blood
45	chr15:57015400-57022600	Weak transcription	HUVEC	blood vessel
46	chr15:57016400-57022600	Weak transcription	Stomach Mucosa	stomach
47	chr15:57016600-57022600	Weak transcription	Fetal Muscle Leg	muscle
48	chr15:57016800-57021200	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr15:57016800-57021400	Weak transcription	Brain Cingulate Gyrus	brain
50	chr15:57016800-57023400	Weak transcription	Fetal Muscle Trunk	muscle

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