Variant report

Variant	rs1631905
Chromosome Location	chr15:57076924-57076925
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:57024297..57027296-chr15:57075507..57077671,3	K562	blood:
2	chr15:57024297..57026872-chr15:57075507..57078884,3	K562	blood:
3	chr15:57067056..57069771-chr15:57075125..57077135,2	K562	blood:

Variant related genes	Relation type
ENSG00000137871	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10518872	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11071285	1.00[CEU][hapmap];0.83[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs12437635	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs12437714	0.85[AMR][1000 genomes]
rs12437735	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12438377	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12438728	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12439116	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12439547	1.00[CEU][hapmap]
rs12439563	0.89[EUR][1000 genomes]
rs12439697	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12440006	0.89[EUR][1000 genomes]
rs12440725	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs12440891	1.00[CEU][hapmap]
rs12441200	1.00[CEU][hapmap]
rs12441263	1.00[CEU][hapmap]
rs12441746	0.84[EUR][1000 genomes]
rs12441769	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12441792	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12442069	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12442630	0.85[AMR][1000 genomes]
rs12442662	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs12443178	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12903143	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12907983	0.89[EUR][1000 genomes]
rs1364541	0.85[AMR][1000 genomes]
rs1529597	0.81[AMR][1000 genomes]
rs1564557	1.00[CEU][hapmap];0.95[MEX][hapmap]
rs1600829	0.89[EUR][1000 genomes]
rs1600831	0.84[EUR][1000 genomes]
rs1647386	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1647391	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977123	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977170	1.00[CEU][hapmap]
rs17238880	1.00[CEU][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs17238894	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17238901	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17238950	0.84[EUR][1000 genomes]
rs17238971	1.00[CEU][hapmap]
rs17819592	0.89[EUR][1000 genomes]
rs17819616	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17819646	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs1834199	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2052641	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2161935	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2899599	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3199	0.90[MEX][hapmap]
rs4287503	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4362334	0.81[AMR][1000 genomes]
rs4424865	0.85[AMR][1000 genomes]
rs4774885	1.00[CEU][hapmap];0.82[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs480701	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6493888	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7176472	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74015901	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs966807	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1631905	TPM2	trans	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57073000-57086200	Weak transcription	Aorta	Aorta
2	chr15:57076800-57078800	Weak transcription	K562	blood

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