Variant report

Variant	rs1600831
Chromosome Location	chr15:56887634-56887635
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10518872	0.89[EUR][1000 genomes]
rs1087705	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11071285	0.95[EUR][1000 genomes]
rs12438377	0.84[EUR][1000 genomes]
rs12438728	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12439116	0.95[EUR][1000 genomes]
rs12439563	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12439586	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12439697	0.84[EUR][1000 genomes]
rs12440006	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12441746	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12442069	0.84[EUR][1000 genomes]
rs12443178	0.95[EUR][1000 genomes]
rs12903143	0.95[EUR][1000 genomes]
rs12907983	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1364541	0.85[EUR][1000 genomes]
rs1564557	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1586022	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1600829	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1631905	0.84[EUR][1000 genomes]
rs1647386	0.84[EUR][1000 genomes]
rs1647391	0.84[EUR][1000 genomes]
rs16977123	0.84[EUR][1000 genomes]
rs17238859	0.84[EUR][1000 genomes]
rs17238880	0.89[EUR][1000 genomes]
rs17238894	0.84[EUR][1000 genomes]
rs17238901	0.84[EUR][1000 genomes]
rs17819592	0.95[EUR][1000 genomes]
rs17819616	0.84[EUR][1000 genomes]
rs1834199	0.95[EUR][1000 genomes]
rs2052641	0.95[EUR][1000 genomes]
rs2161935	0.89[EUR][1000 genomes]
rs2170461	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2170462	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2459565	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2676178	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2676181	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2733231	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2899599	0.89[EUR][1000 genomes]
rs4287503	0.95[EUR][1000 genomes]
rs4594195	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4774869	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4774885	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs480701	0.95[EUR][1000 genomes]
rs6493888	0.95[EUR][1000 genomes]
rs7176472	0.89[EUR][1000 genomes]
rs74015901	0.89[EUR][1000 genomes]
rs8029710	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs966807	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1545	chr15:56659498-56897381	Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv471330	chr15:56659709-56896385	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv471506	chr15:56659709-56896385	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv498847	chr15:56667038-56896395	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2525559	chr15:56669294-56897412	Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv3693203	chr15:56676457-56894478	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv35150	chr15:56677730-56896304	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1049240	chr15:56820899-56890478	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56881800-56891600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr15:56884200-56892000	Weak transcription	Thymus	Thymus
3	chr15:56884400-56889400	Weak transcription	Fetal Thymus	thymus

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