Variant report

Variant	rs12440006
Chromosome Location	chr15:56903990-56903991
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10518855	0.83[EUR][1000 genomes]
rs10518872	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1087705	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11071285	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12437735	0.89[EUR][1000 genomes]
rs12438377	0.89[EUR][1000 genomes]
rs12438728	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12439116	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12439563	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12439586	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12439697	0.89[EUR][1000 genomes]
rs12441746	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12441769	0.89[EUR][1000 genomes]
rs12441792	0.84[EUR][1000 genomes]
rs12442069	0.89[EUR][1000 genomes]
rs12443178	1.00[EUR][1000 genomes]
rs12903143	1.00[EUR][1000 genomes]
rs12907983	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1364541	0.90[EUR][1000 genomes]
rs1564557	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1586022	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1600829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1600831	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1631905	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1647386	0.89[EUR][1000 genomes]
rs1647391	0.89[EUR][1000 genomes]
rs16977123	0.89[EUR][1000 genomes]
rs17238859	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17238880	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17238894	0.89[EUR][1000 genomes]
rs17238901	0.89[EUR][1000 genomes]
rs17819562	1.00[AFR][1000 genomes]
rs17819592	1.00[EUR][1000 genomes]
rs17819616	0.89[EUR][1000 genomes]
rs1834199	1.00[EUR][1000 genomes]
rs2052641	1.00[EUR][1000 genomes]
rs2161935	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2170461	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2170462	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2459565	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2676178	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2676181	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2733231	0.89[EUR][1000 genomes]
rs2899599	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs35813867	0.83[EUR][1000 genomes]
rs4287503	1.00[EUR][1000 genomes]
rs4594195	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4774869	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4774885	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs480701	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6493888	1.00[EUR][1000 genomes]
rs7176472	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs74015901	0.94[EUR][1000 genomes]
rs8029710	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs966807	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1041239	chr15:56888945-56959028	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56901800-56905800	Weak transcription	Thymus	Thymus
2	chr15:56902600-56904600	Weak transcription	Dnd41	blood
3	chr15:56902800-56945400	Weak transcription	Right Ventricle	heart
4	chr15:56903800-56907800	Enhancers	Fetal Thymus	thymus

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