Variant report

Variant	rs12438377
Chromosome Location	chr15:57085377-57085378
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10518872	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11071285	0.89[EUR][1000 genomes]
rs12437635	0.90[AMR][1000 genomes]
rs12437714	0.93[AMR][1000 genomes]
rs12437735	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12437753	0.82[AMR][1000 genomes]
rs12438572	0.86[AMR][1000 genomes]
rs12438728	0.89[EUR][1000 genomes]
rs12439116	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12439563	0.89[EUR][1000 genomes]
rs12439697	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12440006	0.89[EUR][1000 genomes]
rs12440245	0.81[AMR][1000 genomes]
rs12440725	0.88[AMR][1000 genomes]
rs12440891	0.85[AMR][1000 genomes]
rs12441746	0.84[EUR][1000 genomes]
rs12441769	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12441792	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12442069	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12442630	0.93[AMR][1000 genomes]
rs12442642	0.85[AMR][1000 genomes]
rs12442662	0.88[AMR][1000 genomes]
rs12442839	0.85[AMR][1000 genomes]
rs12443125	0.81[AMR][1000 genomes]
rs12443178	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12903143	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12907983	0.89[EUR][1000 genomes]
rs1364541	0.93[AMR][1000 genomes]
rs1529597	0.88[AMR][1000 genomes]
rs1600829	0.89[EUR][1000 genomes]
rs1600831	0.84[EUR][1000 genomes]
rs1631905	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1647386	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1647391	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977123	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17238880	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17238894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17238901	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17238950	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17238971	0.82[AMR][1000 genomes]
rs17819592	0.89[EUR][1000 genomes]
rs17819616	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17819646	0.88[AMR][1000 genomes]
rs17819658	0.85[AMR][1000 genomes]
rs17819664	0.85[AMR][1000 genomes]
rs1834199	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2052641	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2161935	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2899599	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4287503	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4362334	0.88[AMR][1000 genomes]
rs4424865	0.93[AMR][1000 genomes]
rs4774885	0.89[EUR][1000 genomes]
rs480701	0.89[EUR][1000 genomes]
rs6493888	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7176472	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74015901	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs966807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57073000-57086200	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links