Variant report

Variant	rs1834199
Chromosome Location	chr15:57049210-57049211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10518872	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1087705	0.94[EUR][1000 genomes]
rs11071285	1.00[EUR][1000 genomes]
rs12437714	0.82[AMR][1000 genomes]
rs12437735	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12438377	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12438728	1.00[EUR][1000 genomes]
rs12439116	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12439563	1.00[EUR][1000 genomes]
rs12439586	0.94[EUR][1000 genomes]
rs12439697	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12440006	1.00[EUR][1000 genomes]
rs12441746	0.95[EUR][1000 genomes]
rs12441769	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12441792	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12442069	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12442630	0.82[AMR][1000 genomes]
rs12443178	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12903143	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12907983	1.00[EUR][1000 genomes]
rs1364541	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1564557	0.85[EUR][1000 genomes]
rs1586022	0.89[EUR][1000 genomes]
rs1600829	1.00[EUR][1000 genomes]
rs1600831	0.95[EUR][1000 genomes]
rs1631905	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1647386	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1647391	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16977123	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17238859	0.89[EUR][1000 genomes]
rs17238880	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17238894	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17238901	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17819592	1.00[EUR][1000 genomes]
rs17819616	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2052641	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2161935	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2170461	0.89[EUR][1000 genomes]
rs2170462	0.94[EUR][1000 genomes]
rs2459565	0.94[EUR][1000 genomes]
rs2676178	0.94[EUR][1000 genomes]
rs2676181	0.94[EUR][1000 genomes]
rs2733231	0.89[EUR][1000 genomes]
rs2899599	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4287503	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4424865	0.82[AMR][1000 genomes]
rs4594195	0.89[EUR][1000 genomes]
rs4774869	0.89[EUR][1000 genomes]
rs4774885	1.00[EUR][1000 genomes]
rs480701	1.00[EUR][1000 genomes]
rs6493888	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7176472	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs74015901	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8029710	0.90[EUR][1000 genomes]
rs966807	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57042600-57051000	Weak transcription	Adipose Nuclei	Adipose
2	chr15:57047400-57051000	Weak transcription	Aorta	Aorta
3	chr15:57047800-57050200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr15:57047800-57050200	Weak transcription	Osteobl	bone
5	chr15:57047800-57050400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr15:57048000-57050600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:57048200-57050600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:57048800-57050400	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links