Variant report

Variant	rs4636575
Chromosome Location	chr10:118099580-118099581
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10490910	0.96[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs11817085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11817803	0.81[ASN][1000 genomes]
rs12414617	0.81[JPT][hapmap]
rs12416076	0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs12416239	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1419870	1.00[CEU][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap]
rs1419872	0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs17094520	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs17094547	1.00[CEU][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap]
rs1894789	0.94[JPT][hapmap]
rs2286630	0.83[ASN][1000 genomes]
rs41384349	0.96[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap]
rs41386650	0.93[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs4508123	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6585390	0.94[JPT][hapmap]
rs73374910	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7902111	0.96[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1047591	chr10:118087220-118126822	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links