Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118031070..118033357-chr10:118054202..118057030,2	MCF-7	breast:
2	chr10:118052537..118055263-chr10:118056050..118057668,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151892	Chromatin interaction

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10490910	0.83[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs11817085	0.85[ASN][1000 genomes]
rs11817803	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12416076	0.84[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs12416239	0.87[ASN][1000 genomes]
rs1419870	0.82[CHB][hapmap];0.93[JPT][hapmap]
rs1419872	0.84[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs17094490	1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17094504	0.91[ASN][1000 genomes]
rs17094520	0.84[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs17094547	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs1894789	0.84[CHB][hapmap];0.88[JPT][hapmap]
rs2286630	0.87[ASN][1000 genomes]
rs2438177	0.80[AMR][1000 genomes]
rs2532688	0.83[JPT][hapmap];0.80[AMR][1000 genomes]
rs35997739	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740573	0.80[AMR][1000 genomes]
rs41384349	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs41386650	0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs4320877	0.83[JPT][hapmap]
rs4636575	0.81[JPT][hapmap]
rs58693853	0.91[ASN][1000 genomes]
rs6585390	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs73373010	0.84[AMR][1000 genomes]
rs73373021	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73373031	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73374910	0.87[ASN][1000 genomes]
rs7902111	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118056000-118059000	Weak transcription	Pancreas	Pancrea
2	chr10:118056200-118056400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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