Variant report

Variant	rs2532688
Chromosome Location	chr10:118035824-118035825
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118035598..118037239-chr10:118045691..118047252,2	MCF-7	breast:
2	chr10:117759144..117761162-chr10:118033564..118036485,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10490910	0.85[MEX][hapmap];0.91[TSI][hapmap]
rs11197615	0.95[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.90[TSI][hapmap];0.86[ASN][1000 genomes]
rs11816383	0.95[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11817803	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12414617	0.83[JPT][hapmap];0.80[AMR][1000 genomes]
rs12414695	0.88[EUR][1000 genomes]
rs12416076	0.81[AMR][1000 genomes]
rs12416567	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1362216	0.92[EUR][1000 genomes]
rs1419876	0.88[EUR][1000 genomes]
rs17094490	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17094520	0.81[AMR][1000 genomes]
rs2074986	0.81[MEX][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs2286630	0.81[AMR][1000 genomes]
rs2438177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2532687	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2577362	0.92[EUR][1000 genomes]
rs35997739	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3740573	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41384349	0.85[MEX][hapmap];0.91[TSI][hapmap]
rs41386650	0.91[TSI][hapmap];0.81[AMR][1000 genomes]
rs4320877	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61092077	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6585390	0.82[TSI][hapmap]
rs7092496	0.92[EUR][1000 genomes]
rs73371096	0.88[EUR][1000 genomes]
rs73373010	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73373021	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73373031	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7902111	0.92[MEX][hapmap];0.91[TSI][hapmap]
rs8192661	0.91[GIH][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118034200-118038200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:118034400-118038400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:118034400-118040800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:118034600-118038400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:118034600-118043000	Weak transcription	Fetal Stomach	stomach
6	chr10:118034800-118038600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr10:118035000-118036400	Weak transcription	HSMMtube	muscle
8	chr10:118035000-118037600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:118035400-118038000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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