Variant report

Variant	rs2532687
Chromosome Location	chr10:118036089-118036090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11197615	0.83[ASN][1000 genomes]
rs11816383	0.81[ASN][1000 genomes]
rs11817803	0.83[AMR][1000 genomes]
rs12416567	0.84[ASN][1000 genomes]
rs17094490	0.87[AMR][1000 genomes]
rs2438177	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2532688	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs35997739	0.87[AMR][1000 genomes]
rs3740573	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4320877	0.83[ASN][1000 genomes]
rs61092077	0.81[ASN][1000 genomes]
rs73373010	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73373021	0.89[AMR][1000 genomes]
rs73373031	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118034200-118038200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:118034400-118038400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:118034400-118040800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:118034600-118038400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:118034600-118043000	Weak transcription	Fetal Stomach	stomach
6	chr10:118034800-118038600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr10:118035000-118036400	Weak transcription	HSMMtube	muscle
8	chr10:118035000-118037600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:118035400-118038000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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