Variant report
Variant | rs17094490 |
---|---|
Chromosome Location | chr10:118049021-118049022 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr10:118032889..118034807-chr10:118047707..118049305,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000151892 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10490910 | 0.84[JPT][hapmap];0.82[AMR][1000 genomes] |
rs11816383 | 0.84[EUR][1000 genomes] |
rs11817803 | 0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs12414617 | 1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs12414695 | 0.84[EUR][1000 genomes] |
rs12416076 | 0.84[JPT][hapmap];0.89[AMR][1000 genomes] |
rs12416239 | 0.84[AMR][1000 genomes] |
rs12416567 | 0.84[EUR][1000 genomes] |
rs1362216 | 0.88[EUR][1000 genomes] |
rs1419870 | 0.91[JPT][hapmap] |
rs1419872 | 0.84[JPT][hapmap] |
rs1419876 | 0.84[EUR][1000 genomes] |
rs17094504 | 0.91[AFR][1000 genomes];0.87[AMR][1000 genomes] |
rs17094520 | 0.84[JPT][hapmap];0.89[AMR][1000 genomes] |
rs17094547 | 0.92[JPT][hapmap] |
rs1894789 | 0.84[JPT][hapmap] |
rs2074986 | 0.88[EUR][1000 genomes] |
rs2286630 | 0.89[AMR][1000 genomes] |
rs2438177 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs2532687 | 0.87[AMR][1000 genomes] |
rs2532688 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs2577362 | 0.88[EUR][1000 genomes] |
rs35997739 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs3740573 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs41384349 | 0.84[JPT][hapmap] |
rs41386650 | 0.84[JPT][hapmap];0.89[AMR][1000 genomes] |
rs4320877 | 0.84[EUR][1000 genomes] |
rs61092077 | 0.84[EUR][1000 genomes] |
rs6585390 | 0.84[JPT][hapmap] |
rs7092496 | 0.88[EUR][1000 genomes] |
rs73371096 | 0.84[EUR][1000 genomes] |
rs73373010 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs73373021 | 0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73373031 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs73374910 | 0.84[AMR][1000 genomes] |
rs7902111 | 0.84[JPT][hapmap] |
rs8192661 | 0.88[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3449389 | chr10:117806874-118102404 | Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
2 | nsv832000 | chr10:117944492-118116253 | Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr10:118049000-118049400 | Bivalent Enhancer | ES-UCSF4 Cell Line | embryonic stem cell |