Variant report

Variant	rs2074986
Chromosome Location	chr10:118028614-118028615
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:117840390..117842036-chr10:118027784..118029716,2	MCF-7	breast:
2	chr10:117464567..117466683-chr10:118027769..118030068,2	MCF-7	breast:
3	chr10:117197738..117199762-chr10:118026573..118029063,2	MCF-7	breast:
4	chr10:118014061..118016773-chr10:118027145..118029342,2	K562	blood:
5	chr10:118011033..118013216-chr10:118027087..118029971,2	MCF-7	breast:
6	chr10:118000898..118003799-chr10:118027189..118029098,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151892	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10490910	0.83[TSI][hapmap]
rs11197615	1.00[GIH][hapmap];0.82[TSI][hapmap]
rs11816383	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs12414695	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12416567	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12773105	0.86[YRI][hapmap]
rs1362216	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1419876	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17094490	0.88[EUR][1000 genomes]
rs2438177	0.92[EUR][1000 genomes]
rs2532688	0.81[MEX][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs2577362	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35997739	0.88[EUR][1000 genomes]
rs3740573	0.92[EUR][1000 genomes]
rs41384349	0.83[TSI][hapmap]
rs41386650	0.83[TSI][hapmap]
rs4320877	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs61092077	0.96[EUR][1000 genomes]
rs7092496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73371096	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73373010	0.92[EUR][1000 genomes]
rs73373021	0.90[EUR][1000 genomes]
rs73373031	0.88[EUR][1000 genomes]
rs7902111	0.83[TSI][hapmap]
rs8192661	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118019200-118028800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:118020600-118030200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr10:118021800-118028800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:118023000-118028800	Weak transcription	Fetal Kidney	kidney
5	chr10:118023400-118030400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:118023800-118030200	Weak transcription	HSMMtube	muscle
7	chr10:118026600-118030400	Weak transcription	Brain Angular Gyrus	brain
8	chr10:118027400-118029200	Weak transcription	Fetal Muscle Leg	muscle
9	chr10:118027400-118029800	Weak transcription	Fetal Stomach	stomach
10	chr10:118027400-118030000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:118028000-118029200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr10:118028000-118030200	Weak transcription	HSMM	muscle
13	chr10:118028400-118029800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:118028400-118030200	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr10:118028600-118030600	Enhancers	Liver	Liver

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