Variant report

Variant	rs8192661
Chromosome Location	chr10:118031647-118031648
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:118014146..118017027-chr10:118028962..118031890,3	MCF-7	breast:
2	chr10:118006561..118008463-chr10:118028900..118031732,2	MCF-7	breast:
3	chr10:117894623..117897026-chr10:118030243..118031768,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C10orf82-2	chr10:118031516-118031787	NONHSAT016482

Variant related genes	Relation type
ENSG00000151892	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10490910	0.83[TSI][hapmap]
rs11197615	0.82[TSI][hapmap]
rs11816383	1.00[CEU][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs12414695	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12416567	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12773105	0.86[YRI][hapmap]
rs1362216	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419876	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17094490	0.88[EUR][1000 genomes]
rs2074986	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2438177	0.92[EUR][1000 genomes]
rs2532688	0.91[GIH][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs2577362	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35997739	0.88[EUR][1000 genomes]
rs3740573	0.92[EUR][1000 genomes]
rs41384349	0.83[TSI][hapmap]
rs41386650	0.83[TSI][hapmap]
rs4320877	1.00[CEU][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs61092077	0.96[EUR][1000 genomes]
rs7092496	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73371096	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73373010	0.92[EUR][1000 genomes]
rs73373021	0.90[EUR][1000 genomes]
rs73373031	0.88[EUR][1000 genomes]
rs7902111	0.83[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3332511	chr10:118030012-118035110	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118029600-118034200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr10:118029800-118032800	Active TSS	Fetal Kidney	kidney
3	chr10:118030000-118032000	Bivalent Enhancer	Fetal Brain Male	brain
4	chr10:118030000-118034200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
5	chr10:118030000-118034400	Active TSS	Rectal Smooth Muscle	rectum
6	chr10:118030000-118034600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
7	chr10:118030200-118032600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr10:118030200-118033800	Active TSS	HSMM	muscle
9	chr10:118030200-118033800	Active TSS	HSMMtube	muscle
10	chr10:118030200-118034000	Active TSS	Muscle Satellite Cultured Cells	--
11	chr10:118030200-118034200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
12	chr10:118030200-118034200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr10:118030200-118034400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
14	chr10:118030200-118034400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
15	chr10:118030200-118034400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
16	chr10:118030200-118034400	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
17	chr10:118030200-118034600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
18	chr10:118030400-118032000	Bivalent/Poised TSS	Colonic Mucosa	Colon
19	chr10:118030400-118032800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:118030400-118033200	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
21	chr10:118030400-118033400	Active TSS	Brain Angular Gyrus	brain
22	chr10:118030400-118033800	Bivalent/Poised TSS	Left Ventricle	heart
23	chr10:118030400-118034200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr10:118030400-118034200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
25	chr10:118030400-118034200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:118030400-118034200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr10:118030400-118034200	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr10:118030400-118034400	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr10:118030400-118034600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:118030600-118031800	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:118030600-118031800	Active TSS	Gastric	stomach
32	chr10:118030600-118031800	Bivalent Enhancer	Spleen	Spleen
33	chr10:118030600-118032200	Bivalent/Poised TSS	Osteobl	bone
34	chr10:118030600-118032600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr10:118030600-118033200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr10:118030600-118034000	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
37	chr10:118030600-118034200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr10:118030600-118034200	Active TSS	Ovary	ovary
39	chr10:118030600-118034400	Active TSS	Right Atrium	heart
40	chr10:118030600-118034600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
41	chr10:118030800-118031800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr10:118030800-118032400	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
43	chr10:118030800-118032600	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr10:118030800-118033000	Bivalent/Poised TSS	NH-A	brain
45	chr10:118030800-118033800	Flanking Active TSS	Primary hematopoietic stem cells	blood
46	chr10:118030800-118034000	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
47	chr10:118030800-118034200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr10:118030800-118034200	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
49	chr10:118030800-118034200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr10:118030800-118034200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin

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