Variant report

Variant	rs35997739
Chromosome Location	chr10:118056167-118056168
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118031070..118033357-chr10:118054202..118057030,2	MCF-7	breast:
2	chr10:118052537..118055263-chr10:118056050..118057668,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151892	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10490910	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11816383	0.84[EUR][1000 genomes]
rs11817085	0.85[ASN][1000 genomes]
rs11817803	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12414617	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12414695	0.84[EUR][1000 genomes]
rs12416076	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12416239	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12416567	0.84[EUR][1000 genomes]
rs1362216	0.88[EUR][1000 genomes]
rs1419872	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1419876	0.84[EUR][1000 genomes]
rs17094490	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17094504	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17094520	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2074986	0.88[EUR][1000 genomes]
rs2286630	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2438177	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2532687	0.87[AMR][1000 genomes]
rs2532688	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2577362	0.88[EUR][1000 genomes]
rs3740573	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41386650	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4320877	0.84[EUR][1000 genomes]
rs58693853	0.91[ASN][1000 genomes]
rs61092077	0.84[EUR][1000 genomes]
rs7092496	0.88[EUR][1000 genomes]
rs73371096	0.84[EUR][1000 genomes]
rs73373010	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73373021	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73373031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73374910	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8192661	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118055800-118056200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:118056000-118059000	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links