Variant report

Variant	rs58693853
Chromosome Location	chr10:118062806-118062807
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10490910	0.96[ASN][1000 genomes]
rs11197615	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11817085	0.94[ASN][1000 genomes]
rs11817803	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12414617	0.91[ASN][1000 genomes]
rs12416076	0.98[ASN][1000 genomes]
rs12416239	0.96[ASN][1000 genomes]
rs1419872	0.98[ASN][1000 genomes]
rs17094504	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17094520	0.96[ASN][1000 genomes]
rs2286630	0.96[ASN][1000 genomes]
rs35997739	0.91[ASN][1000 genomes]
rs41386650	0.95[ASN][1000 genomes]
rs73373031	0.90[ASN][1000 genomes]
rs73374910	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118060400-118065800	Weak transcription	Osteobl	bone
2	chr10:118060800-118065600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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