Variant report

Variant	rs41386650
Chromosome Location	chr10:118084468-118084469
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:118084446-118084675	H1-hESC	embryonic stem cell:	n/a	n/a
2	YY1	chr10:118083829-118084806	H1-hESC	embryonic stem cell:	n/a	chr10:118084362-118084384
3	E2F6	chr10:118084011-118085263	H1-hESC	embryonic stem cell:	n/a	n/a
4	MAX	chr10:118084412-118085165	H1-hESC	embryonic stem cell:	n/a	n/a
5	CTBP2	chr10:118083804-118084745	H1-hESC	embryonic stem cell:	n/a	n/a
6	MAX	chr10:118084414-118085224	H1-hESC	embryonic stem cell:	n/a	n/a
7	MAX	chr10:118084440-118084898	H1-hESC	embryonic stem cell:	n/a	n/a
8	ZNF143	chr10:118084241-118084595	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
CCDC172	TF binding region

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10490910	1.00[CEU][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11197615	0.82[TSI][hapmap]
rs11816383	0.83[TSI][hapmap];0.86[AMR][1000 genomes]
rs11817085	0.97[ASN][1000 genomes]
rs11817803	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12414617	0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs12416076	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12416239	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12416567	0.86[AMR][1000 genomes]
rs1419870	1.00[JPT][hapmap]
rs1419872	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17094490	0.84[JPT][hapmap];0.89[AMR][1000 genomes]
rs17094504	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17094520	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17094547	1.00[JPT][hapmap]
rs1894789	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2074986	0.83[TSI][hapmap]
rs2286630	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2438177	0.81[AMR][1000 genomes]
rs2532688	0.91[TSI][hapmap];0.81[AMR][1000 genomes]
rs35997739	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3740573	0.85[AMR][1000 genomes]
rs41384349	1.00[CEU][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs4320877	0.83[TSI][hapmap]
rs4636575	0.93[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap]
rs58693853	0.95[ASN][1000 genomes]
rs61092077	0.82[AMR][1000 genomes]
rs6585390	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.89[YRI][hapmap]
rs73373010	0.85[AMR][1000 genomes]
rs73373021	0.87[AMR][1000 genomes]
rs73373031	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73374910	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7902111	0.96[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap]
rs8192661	0.83[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118083600-118084600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr10:118083600-118084600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr10:118083800-118085200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr10:118083800-118085200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:118084000-118084600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr10:118084000-118084600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr10:118084000-118085600	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr10:118084200-118085600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:118084400-118084800	Active TSS	H9 Cell Line	embryonic stem cell
10	chr10:118084400-118084800	Active TSS	iPS-15b Cell Line	embryonic stem cell
11	chr10:118084400-118085000	Active TSS	HUES6 Cell Line	embryonic stem cell

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