Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11197615	1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs11816383	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12414695	1.00[EUR][1000 genomes]
rs12416076	0.86[AMR][1000 genomes]
rs12416239	0.80[AMR][1000 genomes]
rs1362216	0.96[EUR][1000 genomes]
rs1419876	1.00[EUR][1000 genomes]
rs17094490	0.84[EUR][1000 genomes]
rs17094520	0.86[AMR][1000 genomes]
rs2074986	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2286630	0.86[AMR][1000 genomes]
rs2438177	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2532687	0.84[ASN][1000 genomes]
rs2532688	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2577362	0.96[EUR][1000 genomes]
rs35997739	0.84[EUR][1000 genomes]
rs3740573	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41386650	0.86[AMR][1000 genomes]
rs4320877	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61092077	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7092496	0.96[EUR][1000 genomes]
rs73371096	1.00[EUR][1000 genomes]
rs73373010	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73373021	0.86[EUR][1000 genomes]
rs73373031	0.84[EUR][1000 genomes]
rs73374910	0.80[AMR][1000 genomes]
rs8192661	1.00[CEU][hapmap];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1043339	chr10:118010822-118025492	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118014600-118024000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:118014800-118022200	Weak transcription	Liver	Liver
3	chr10:118015800-118022400	Weak transcription	Fetal Kidney	kidney
4	chr10:118016000-118023000	Weak transcription	HSMMtube	muscle
5	chr10:118016200-118024400	Weak transcription	HSMM	muscle
6	chr10:118017200-118022200	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:118017600-118022200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:118017600-118022200	Weak transcription	Fetal Stomach	stomach
9	chr10:118017600-118022400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:118017600-118024800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr10:118017600-118025000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr10:118019200-118028800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr10:118019400-118020800	Enhancers	Brain Germinal Matrix	brain
14	chr10:118020000-118021600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:118020600-118020800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr10:118020600-118020800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr10:118020600-118030200	Weak transcription	Muscle Satellite Cultured Cells	--

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