Variant report

Variant	rs11816383
Chromosome Location	chr10:118018805-118018806
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:118018705-118018957	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
GFRA1	TF binding region

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10490910	0.83[TSI][hapmap]
rs11197615	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.98[ASN][1000 genomes]
rs12414695	1.00[EUR][1000 genomes]
rs12416076	0.86[AMR][1000 genomes]
rs12416239	0.80[AMR][1000 genomes]
rs12416567	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1362216	0.96[EUR][1000 genomes]
rs1419870	0.81[JPT][hapmap]
rs1419876	1.00[EUR][1000 genomes]
rs17094490	0.84[EUR][1000 genomes]
rs17094520	0.86[AMR][1000 genomes]
rs2074986	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs2286630	0.86[AMR][1000 genomes]
rs2438177	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2532687	0.81[ASN][1000 genomes]
rs2532688	0.95[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2577362	0.96[EUR][1000 genomes]
rs35997739	0.84[EUR][1000 genomes]
rs3740573	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3781557	0.81[ASN][1000 genomes]
rs41384349	0.83[TSI][hapmap]
rs41386650	0.83[TSI][hapmap];0.86[AMR][1000 genomes]
rs4320877	0.81[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.93[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61092077	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7092496	0.96[EUR][1000 genomes]
rs73371096	1.00[EUR][1000 genomes]
rs73373010	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73373021	0.86[EUR][1000 genomes]
rs73373031	0.84[EUR][1000 genomes]
rs73374910	0.80[AMR][1000 genomes]
rs7902111	0.85[MEX][hapmap];0.83[TSI][hapmap]
rs8192661	1.00[CEU][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1043339	chr10:118010822-118025492	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118014600-118024000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:118014800-118022200	Weak transcription	Liver	Liver
3	chr10:118015200-118019200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:118015800-118022400	Weak transcription	Fetal Kidney	kidney
5	chr10:118016000-118020600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr10:118016000-118023000	Weak transcription	HSMMtube	muscle
7	chr10:118016200-118019800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr10:118016200-118024400	Weak transcription	HSMM	muscle
9	chr10:118016400-118019000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr10:118017000-118020400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr10:118017200-118020200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr10:118017200-118022200	Weak transcription	Fetal Muscle Leg	muscle
13	chr10:118017600-118022200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:118017600-118022200	Weak transcription	Fetal Stomach	stomach
15	chr10:118017600-118022400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:118017600-118024800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr10:118017600-118025000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr10:118018000-118019400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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