Variant report

Variant	rs73373021
Chromosome Location	chr10:118044935-118044936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118041442..118043123-chr10:118044794..118046648,2	K562	blood:
2	chr10:118030488..118032578-chr10:118042557..118047503,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151892	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10490910	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11816383	0.86[EUR][1000 genomes]
rs11817803	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12414617	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12414695	0.86[EUR][1000 genomes]
rs12416076	0.87[AMR][1000 genomes]
rs12416239	0.82[AMR][1000 genomes]
rs12416567	0.86[EUR][1000 genomes]
rs1362216	0.90[EUR][1000 genomes]
rs1419876	0.86[EUR][1000 genomes]
rs17094490	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17094504	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17094520	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2074986	0.90[EUR][1000 genomes]
rs2286630	0.87[AMR][1000 genomes]
rs2438177	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2532687	0.89[AMR][1000 genomes]
rs2532688	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2577362	0.90[EUR][1000 genomes]
rs35997739	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3740573	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs41386650	0.87[AMR][1000 genomes]
rs4320877	0.86[EUR][1000 genomes]
rs61092077	0.86[EUR][1000 genomes]
rs7092496	0.90[EUR][1000 genomes]
rs73371096	0.86[EUR][1000 genomes]
rs73373010	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73373031	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73374910	0.82[AMR][1000 genomes]
rs8192661	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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