Variant report

Variant	rs4650703
Chromosome Location	chr1:175105942-175105943
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1011808	1.00[AFR][1000 genomes]
rs10732995	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10753090	1.00[AFR][1000 genomes]
rs10912897	1.00[AFR][1000 genomes]
rs2157587	1.00[AFR][1000 genomes]
rs2861156	1.00[AFR][1000 genomes]
rs4390138	1.00[AFR][1000 genomes]
rs4650707	1.00[AFR][1000 genomes]
rs4650725	1.00[AFR][1000 genomes]
rs4651340	1.00[AFR][1000 genomes]
rs4651342	1.00[AFR][1000 genomes]
rs4651360	1.00[AFR][1000 genomes]
rs6425324	1.00[AFR][1000 genomes]
rs6701249	1.00[AFR][1000 genomes]
rs7533374	1.00[AFR][1000 genomes]
rs760487	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825487	chr1:175031609-175113572	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv508648	chr1:175056387-175121913	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175102000-175107600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:175105200-175106200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:175105200-175110000	Weak transcription	GM12878-XiMat	blood
4	chr1:175105400-175106800	Enhancers	Liver	Liver
5	chr1:175105400-175107000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr1:175105800-175108000	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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