Variant report

Variant	rs2861156
Chromosome Location	chr1:175111918-175111919
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1011808	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10732995	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs10753090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10753092	0.91[AMR][1000 genomes]
rs10912897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2142507	0.84[AMR][1000 genomes]
rs2157587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4140637	0.84[AMR][1000 genomes]
rs4390138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4650703	1.00[AFR][1000 genomes]
rs4650707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4650725	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4651340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4651342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4651360	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6425324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6701249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7533374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs760487	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825487	chr1:175031609-175113572	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv508648	chr1:175056387-175121913	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv522101	chr1:175109517-175151183	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv429924	chr1:175110480-175134314	Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175108000-175119800	Weak transcription	Adipose Nuclei	Adipose
2	chr1:175109600-175114000	Weak transcription	Liver	Liver
3	chr1:175110200-175127400	Weak transcription	Left Ventricle	heart
4	chr1:175110600-175112400	Enhancers	Primary B cells from peripheral blood	blood
5	chr1:175110800-175112400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr1:175111400-175122600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:175111600-175112000	Active TSS	GM12878-XiMat	blood
8	chr1:175111600-175114800	Weak transcription	HepG2	liver
9	chr1:175111600-175115400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr1:175111600-175115600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr1:175111600-175116000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr1:175111600-175119600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr1:175111800-175114800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr1:175111800-175115600	Weak transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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