Variant report

Variant	rs10753092
Chromosome Location	chr1:175141050-175141051
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:175139577..175141304-chr1:175158200..175161170,2	K562	blood:
2	chr1:175065484..175067807-chr1:175139999..175142698,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1011808	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10732995	1.00[CEU][hapmap]
rs10753090	0.91[AMR][1000 genomes]
rs10912897	1.00[CEU][hapmap];0.91[AMR][1000 genomes]
rs2142507	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2157587	1.00[CEU][hapmap];0.91[AMR][1000 genomes]
rs2861156	0.91[AMR][1000 genomes]
rs4140637	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4390138	0.91[AMR][1000 genomes]
rs4650707	0.91[AMR][1000 genomes]
rs4650725	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4651340	0.91[AMR][1000 genomes]
rs4651342	0.91[AMR][1000 genomes]
rs4651354	0.85[AMR][1000 genomes]
rs4651360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6425324	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6701249	0.91[AMR][1000 genomes]
rs7533374	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7533495	1.00[CEU][hapmap]
rs7556595	1.00[ASN][1000 genomes]
rs760487	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522101	chr1:175109517-175151183	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv528874	chr1:175140319-175151183	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175126800-175141800	Strong transcription	Primary B cells from cord blood	blood
2	chr1:175126800-175148800	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr1:175127000-175148400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr1:175127200-175147800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr1:175127400-175144200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:175127400-175149400	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr1:175129200-175159600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr1:175130200-175152600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr1:175130400-175143400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:175135000-175152600	Weak transcription	Aorta	Aorta
11	chr1:175135000-175158400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr1:175135800-175146000	Weak transcription	Colonic Mucosa	Colon
13	chr1:175135800-175146000	Weak transcription	Fetal Intestine Large	intestine
14	chr1:175136000-175141800	Weak transcription	Fetal Muscle Leg	muscle
15	chr1:175136000-175142200	Weak transcription	Fetal Muscle Trunk	muscle
16	chr1:175136000-175145200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr1:175136000-175145400	Weak transcription	Ovary	ovary
18	chr1:175136000-175151600	Weak transcription	Fetal Stomach	stomach
19	chr1:175136000-175157600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr1:175136200-175141800	Weak transcription	Psoas Muscle	Psoas
21	chr1:175136200-175145000	Weak transcription	Fetal Thymus	thymus
22	chr1:175136200-175146800	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr1:175136600-175145200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr1:175137400-175145400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr1:175138000-175143200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr1:175138000-175148000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr1:175138400-175145200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr1:175138600-175141400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr1:175138800-175141800	Weak transcription	GM12878-XiMat	blood
30	chr1:175139200-175141200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr1:175139200-175141600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr1:175139200-175143400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr1:175139200-175145400	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr1:175139400-175142400	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr1:175139400-175148400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr1:175139600-175141200	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr1:175140000-175141600	Weak transcription	Primary T cells from cord blood	blood
38	chr1:175140000-175144400	Strong transcription	HMEC	breast
39	chr1:175140200-175141800	Weak transcription	Spleen	Spleen
40	chr1:175140200-175142600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr1:175140200-175142600	Strong transcription	Placenta	Placenta
42	chr1:175140200-175142800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr1:175140200-175143400	Strong transcription	Primary hematopoietic stem cells	blood
44	chr1:175140200-175145400	Weak transcription	Thymus	Thymus
45	chr1:175140200-175145600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr1:175140200-175146000	Weak transcription	Right Ventricle	heart
47	chr1:175140200-175146600	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr1:175140200-175147800	Strong transcription	Liver	Liver
49	chr1:175140400-175141200	Enhancers	Fetal Heart	heart
50	chr1:175140400-175141400	Weak transcription	Left Ventricle	heart

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