Variant report

Variant	rs4651360
Chromosome Location	chr1:175148459-175148460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1011808	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10732995	1.00[AFR][1000 genomes]
rs10753090	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10753092	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912897	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2142507	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2157587	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2861156	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs4140637	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4390138	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs4650703	1.00[AFR][1000 genomes]
rs4650707	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs4650725	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4651340	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs4651342	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs4651354	0.85[AMR][1000 genomes]
rs6425324	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6701249	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7533374	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7556595	1.00[ASN][1000 genomes]
rs760487	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522101	chr1:175109517-175151183	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv528874	chr1:175140319-175151183	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175126800-175148800	Strong transcription	Primary monocytes fromperipheralblood	blood
2	chr1:175127400-175149400	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr1:175129200-175159600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:175130200-175152600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:175135000-175152600	Weak transcription	Aorta	Aorta
6	chr1:175135000-175158400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr1:175136000-175151600	Weak transcription	Fetal Stomach	stomach
8	chr1:175136000-175157600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr1:175140800-175149200	Weak transcription	Small Intestine	intestine
10	chr1:175141000-175160200	Weak transcription	HUVEC	blood vessel
11	chr1:175141400-175158400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:175141600-175149200	Strong transcription	Primary T cells from cord blood	blood
13	chr1:175142800-175149000	Weak transcription	Psoas Muscle	Psoas
14	chr1:175143000-175160800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr1:175143600-175158000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr1:175144000-175151000	Weak transcription	K562	blood
17	chr1:175144200-175148600	Strong transcription	Primary B cells from cord blood	blood
18	chr1:175144400-175148800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr1:175145400-175148600	Strong transcription	Fetal Intestine Small	intestine
20	chr1:175145400-175149600	Genic enhancers	HMEC	breast
21	chr1:175145800-175148800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr1:175145800-175152600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr1:175146000-175148600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr1:175146000-175148600	Genic enhancers	Pancreas	Pancrea
25	chr1:175146000-175157800	Genic enhancers	Primary B cells from peripheral blood	blood
26	chr1:175146200-175149200	Weak transcription	Hela-S3	cervix
27	chr1:175146200-175159400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr1:175146200-175159800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr1:175146600-175148800	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr1:175146600-175155600	Weak transcription	Ovary	ovary
31	chr1:175146800-175150800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr1:175146800-175160400	Weak transcription	Fetal Intestine Large	intestine
33	chr1:175147000-175149600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr1:175147000-175150800	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr1:175147000-175151000	Weak transcription	Fetal Thymus	thymus
36	chr1:175147000-175153800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr1:175147000-175155600	Weak transcription	Fetal Muscle Leg	muscle
38	chr1:175147000-175156200	Weak transcription	Duodenum Mucosa	Duodenum
39	chr1:175147200-175148600	Enhancers	Gastric	stomach
40	chr1:175147200-175149800	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr1:175147200-175150400	Genic enhancers	Lung	lung
42	chr1:175147200-175151400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr1:175147200-175155600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr1:175147400-175148600	Weak transcription	GM12878-XiMat	blood
45	chr1:175147400-175149200	Weak transcription	Spleen	Spleen
46	chr1:175147400-175149400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr1:175147400-175149600	Enhancers	Placenta	Placenta
48	chr1:175147600-175160400	Weak transcription	Colonic Mucosa	Colon
49	chr1:175147800-175149000	Weak transcription	Adipose Nuclei	Adipose
50	chr1:175147800-175151400	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links