Variant report

Variant	rs4707928
Chromosome Location	chr6:72316230-72316231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1156409	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1486605	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16881433	0.96[EUR][1000 genomes]
rs16881439	0.92[EUR][1000 genomes]
rs16881449	0.92[EUR][1000 genomes]
rs16881450	0.92[EUR][1000 genomes]
rs16881458	0.92[EUR][1000 genomes]
rs16881463	0.92[EUR][1000 genomes]
rs2087093	0.96[EUR][1000 genomes]
rs2881952	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3920742	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56699974	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6453557	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73747164	0.96[EUR][1000 genomes]
rs73747165	0.88[EUR][1000 genomes]
rs73747166	0.96[EUR][1000 genomes]
rs9293845	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9442674	0.96[EUR][1000 genomes]
rs9446403	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830685	chr6:72244007-72410757	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72313400-72318400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:72313800-72318600	Weak transcription	Osteobl	bone
3	chr6:72315600-72318600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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