Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:72310354..72312886-chr6:72319784..72322703,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1156409	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1486605	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16881433	0.92[EUR][1000 genomes]
rs16881439	0.88[EUR][1000 genomes]
rs16881449	0.88[EUR][1000 genomes]
rs16881450	0.88[EUR][1000 genomes]
rs16881458	0.88[EUR][1000 genomes]
rs16881463	0.88[EUR][1000 genomes]
rs16881683	1.00[JPT][hapmap]
rs2087093	0.92[EUR][1000 genomes]
rs2881952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3920742	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4707928	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56699974	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73747164	0.92[EUR][1000 genomes]
rs73747165	0.85[EUR][1000 genomes]
rs73747166	0.92[EUR][1000 genomes]
rs9293845	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9442674	0.92[EUR][1000 genomes]
rs9446403	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830685	chr6:72244007-72410757	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72319800-72320200	Enhancers	H9 Cell Line	embryonic stem cell
2	chr6:72319800-72320200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr6:72319800-72320400	Enhancers	iPS-20b Cell Line	embryonic stem cell

Quick Search: