Variant report

Variant	rs9442674
Chromosome Location	chr6:72206037-72206038
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1156409	0.92[EUR][1000 genomes]
rs12196125	1.00[CHB][hapmap]
rs12212550	1.00[CHB][hapmap]
rs1486605	0.92[EUR][1000 genomes]
rs16881433	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16881439	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16881449	0.96[EUR][1000 genomes]
rs16881450	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16881458	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16881463	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16881683	1.00[CEU][hapmap]
rs2087093	1.00[EUR][1000 genomes]
rs2881952	0.92[EUR][1000 genomes]
rs3920742	0.92[EUR][1000 genomes]
rs4707928	0.96[EUR][1000 genomes]
rs56699974	0.84[EUR][1000 genomes]
rs57287906	0.81[AFR][1000 genomes]
rs6453557	0.92[EUR][1000 genomes]
rs73747164	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73747165	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73747166	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9293845	0.92[EUR][1000 genomes]
rs9446403	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72192000-72209600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:72201000-72206400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:72205200-72206200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:72205200-72206200	Flanking Active TSS	Primary B cells from peripheral blood	blood
5	chr6:72205200-72206200	Enhancers	HSMM	muscle
6	chr6:72205400-72206400	Flanking Active TSS	Primary B cells from cord blood	blood
7	chr6:72205400-72206600	Active TSS	Stomach Smooth Muscle	stomach
8	chr6:72205600-72206200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:72205600-72206200	Active TSS	Primary T cells from cord blood	blood
10	chr6:72205600-72206200	Active TSS	Colonic Mucosa	Colon
11	chr6:72205600-72206200	Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr6:72205600-72206200	Active TSS	Fetal Kidney	kidney
13	chr6:72205600-72206200	Active TSS	Fetal Stomach	stomach
14	chr6:72205600-72206200	Active TSS	Rectal Smooth Muscle	rectum
15	chr6:72205600-72206200	Active TSS	NHDF-Ad	bronchial
16	chr6:72205600-72206400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:72205600-72206400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
18	chr6:72205600-72206400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:72205600-72206400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:72205600-72206400	Active TSS	Ovary	ovary
21	chr6:72205600-72206400	Active TSS	Rectal Mucosa Donor 29	rectum
22	chr6:72205600-72206400	Active TSS	Right Atrium	heart
23	chr6:72205600-72206600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:72205600-72206600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:72205600-72206600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
26	chr6:72205600-72206600	Enhancers	NH-A	brain
27	chr6:72205600-72206600	Active TSS	NHLF	lung
28	chr6:72205600-72206800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:72205600-72206800	Flanking Active TSS	HUVEC	blood vessel
30	chr6:72205800-72206200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:72205800-72206200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:72205800-72206200	Active TSS	Adipose Nuclei	Adipose
33	chr6:72205800-72206200	Active TSS	Aorta	Aorta
34	chr6:72205800-72206200	Active TSS	Brain Hippocampus Middle	brain
35	chr6:72205800-72206200	Active TSS	Duodenum Mucosa	Duodenum
36	chr6:72205800-72206200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
37	chr6:72205800-72206200	Active TSS	Fetal Muscle Leg	muscle
38	chr6:72205800-72206200	Active TSS	Psoas Muscle	Psoas
39	chr6:72205800-72206200	Active TSS	Thymus	Thymus
40	chr6:72205800-72206200	Active TSS	HSMMtube	muscle
41	chr6:72205800-72206600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:72205800-72206600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr6:72205800-72206600	Active TSS	Primary hematopoietic stem cells	blood
44	chr6:72205800-72206600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:72205800-72206600	Enhancers	Fetal Heart	heart
46	chr6:72205800-72206600	Active TSS	Fetal Lung	lung
47	chr6:72205800-72206600	Active TSS	Osteobl	bone
48	chr6:72206000-72206200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
49	chr6:72206000-72206200	Enhancers	Primary T helper naive cells from peripheral blood	blood
50	chr6:72206000-72206200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle

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