Variant report
| Variant | rs73747166 |
|---|---|
| Chromosome Location | chr6:72225090-72225091 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-OGFRL1-12 | chr6:72224903-72225095 | NONHSAT113519 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs1156409 | 0.92[EUR][1000 genomes] |
| rs1486605 | 0.92[EUR][1000 genomes] |
| rs16881433 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16881439 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs16881449 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs16881450 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs16881458 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs16881463 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2087093 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2881952 | 0.92[EUR][1000 genomes] |
| rs3920742 | 0.92[EUR][1000 genomes] |
| rs4707928 | 0.96[EUR][1000 genomes] |
| rs56699974 | 0.84[EUR][1000 genomes] |
| rs6453557 | 0.92[EUR][1000 genomes] |
| rs73747164 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73747165 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9293845 | 0.92[EUR][1000 genomes] |
| rs9442674 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9446403 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830684 | chr6:72094842-72282684 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 488 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
