Variant report

Variant	rs56699974
Chromosome Location	chr6:72387109-72387110
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10455242	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1156409	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1486605	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16881433	0.84[EUR][1000 genomes]
rs16881439	0.81[EUR][1000 genomes]
rs16881449	0.81[EUR][1000 genomes]
rs16881450	0.81[EUR][1000 genomes]
rs16881458	0.81[EUR][1000 genomes]
rs16881463	0.81[EUR][1000 genomes]
rs2087093	0.84[EUR][1000 genomes]
rs2881952	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3920742	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4707928	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6453557	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73747164	0.84[EUR][1000 genomes]
rs73747166	0.84[EUR][1000 genomes]
rs9293845	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9442674	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830685	chr6:72244007-72410757	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830686	chr6:72336896-72534267	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72385000-72388000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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