Variant report

Variant	rs4741540
Chromosome Location	chr9:15771005-15771006
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10119980	0.84[AMR][1000 genomes]
rs10217374	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1039812	0.82[EUR][1000 genomes]
rs1039815	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1039816	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10429512	0.96[AFR][1000 genomes]
rs10732334	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10733296	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10738407	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10756702	0.90[AFR][1000 genomes]
rs10756706	0.88[EUR][1000 genomes]
rs10810445	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10810447	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12350267	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1355172	0.82[EUR][1000 genomes]
rs1417974	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1417975	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1417976	0.84[AFR][1000 genomes]
rs1891208	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1935225	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1964706	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1970496	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2055773	0.82[EUR][1000 genomes]
rs2055774	0.82[EUR][1000 genomes]
rs2089618	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2136354	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2136357	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2175083	0.82[EUR][1000 genomes]
rs2185664	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2382533	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2382535	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4146292	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4740623	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4741533	0.84[AMR][1000 genomes]
rs4741536	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4741537	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6474949	0.82[EUR][1000 genomes]
rs6474956	0.91[AMR][1000 genomes]
rs6474957	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6474961	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6474973	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7025247	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7035422	0.84[AMR][1000 genomes]
rs7038920	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7849159	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7854094	0.84[EUR][1000 genomes]
rs7865193	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7865391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7866413	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7874094	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs958870	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9919009	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv528964	chr9:15760822-15875162	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15756200-15790800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:15759200-15784400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr9:15763600-15774400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links