Variant report

Variant	rs10429512
Chromosome Location	chr9:15812763-15812764
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10732334	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs10756702	0.86[AFR][1000 genomes]
rs10756706	0.83[AMR][1000 genomes]
rs10810445	1.00[MEX][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs10810447	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs1081244	1.00[ASN][1000 genomes]
rs1081246	1.00[ASN][1000 genomes]
rs1081247	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs1341739	1.00[CHD][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs1355172	0.83[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs1361608	1.00[ASN][1000 genomes]
rs1417975	0.90[LWK][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs1417976	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1472941	0.83[GIH][hapmap];1.00[MEX][hapmap]
rs1553727	0.83[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs1572977	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1578556	1.00[ASN][1000 genomes]
rs1773046	1.00[ASN][1000 genomes]
rs1832818	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1891208	0.89[AFR][1000 genomes]
rs2055774	0.83[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs2096119	1.00[YRI][hapmap]
rs2105320	1.00[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153724	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2185664	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs2382536	1.00[ASW][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap]
rs276434	1.00[GIH][hapmap]
rs276437	1.00[YRI][hapmap]
rs4146288	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4146289	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4146292	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs4741537	0.83[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs4741540	0.96[AFR][1000 genomes]
rs4741544	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6474941	0.83[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs6474949	0.83[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs6474957	0.83[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs6474967	0.91[LWK][hapmap]
rs6474973	1.00[ASW][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap]
rs6474976	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6474977	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6474978	1.00[ASN][1000 genomes]
rs6474979	1.00[ASN][1000 genomes]
rs7027040	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7035422	0.83[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs7468716	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs770190	1.00[ASN][1000 genomes]
rs770193	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs770195	1.00[ASN][1000 genomes]
rs770196	1.00[ASN][1000 genomes]
rs770197	1.00[ASN][1000 genomes]
rs770203	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs770206	1.00[YRI][hapmap]
rs7852250	1.00[CEU][hapmap]
rs7860463	1.00[ASN][1000 genomes]
rs7865141	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7865391	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs7870315	0.83[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs7874094	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs9406543	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9406544	1.00[ASN][1000 genomes]
rs9406546	1.00[ASN][1000 genomes]
rs954932	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs955193	1.00[ASW][hapmap];0.83[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap]
rs9919009	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv528964	chr9:15760822-15875162	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv892636	chr9:15794858-15876507	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv613660	chr9:15794897-15817119	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv6486	chr9:15805220-15837639	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv508536	chr9:15811619-15834267	Enhancers Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15811200-15815000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:15811200-15816000	Weak transcription	Pancreas	Pancrea
3	chr9:15812000-15813400	Weak transcription	Psoas Muscle	Psoas

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