Variant report

Variant	rs4749834
Chromosome Location	chr10:5671808-5671809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:58)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:58 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr10:5671402-5672160	K562	blood:	n/a	n/a
2	CTCF	chr10:5671760-5672153	A549	lung:	n/a	n/a
3	RAD21	chr10:5671663-5672515	SK-N-SH	brain:	n/a	n/a
4	CTCF	chr10:5671756-5672228	IMR90	lung:	n/a	n/a
5	RUNX3	chr10:5671261-5672151	GM12878	blood:	n/a	n/a
6	RAD21	chr10:5671749-5672276	A549	lung:	n/a	n/a
7	FOXA2	chr10:5671760-5671990	HepG2	liver:	n/a	n/a
8	RAD21	chr10:5671629-5672328	HCT-116	colon:	n/a	n/a
9	ZNF384	chr10:5671372-5672154	GM12878	blood:	n/a	n/a
10	RAD21	chr10:5671764-5672104	H1-hESC	embryonic stem cell:	n/a	n/a
11	CTCF	chr10:5671803-5672208	H1-hESC	embryonic stem cell:	n/a	n/a
12	RUNX3	chr10:5671289-5672188	GM12878	blood:	n/a	n/a
13	CTCF	chr10:5671758-5672286	HCT-116	colon:	n/a	n/a
14	RAD21	chr10:5671704-5672262	MCF-7	breast:	n/a	n/a
15	FOXA1	chr10:5671765-5672062	HepG2	liver:	n/a	n/a
16	ZNF143	chr10:5671789-5672178	K562	blood:	n/a	n/a
17	SMC3	chr10:5671640-5672433	SK-N-SH	brain:	n/a	n/a
18	RCOR1	chr10:5670570-5672733	IMR90	lung:	n/a	n/a
19	CTCF	chr10:5671775-5672217	GM12878	blood:	n/a	n/a
20	FOXA1	chr10:5671685-5671993	HepG2	liver:	n/a	n/a
21	CTCF	chr10:5671798-5672128	SK-N-SH_RA	brain:	n/a	n/a
22	CTCF	chr10:5671673-5672303	HCT-116	colon:	n/a	n/a
23	RAD21	chr10:5671766-5672223	HepG2	liver:	n/a	n/a
24	ZNF143	chr10:5671802-5672190	GM12878	blood:	n/a	n/a
25	TBL1XR1	chr10:5671759-5672134	K562	blood:	n/a	n/a
26	CTCF	chr10:5671732-5672852	A549	lung:	n/a	n/a
27	TCF12	chr10:5671559-5672203	A549	lung:	n/a	n/a
28	RAD21	chr10:5671773-5672298	ECC-1	luminal epithelium:	n/a	n/a
29	SMC3	chr10:5671793-5672178	GM12878	blood:	n/a	n/a
30	CTCF	chr10:5671769-5672241	T-47D	breast:	n/a	n/a
31	FOXA1	chr10:5671660-5672069	HepG2	liver:	n/a	n/a
32	RAD21	chr10:5671799-5672176	HepG2	liver:	n/a	n/a
33	CTCF	chr10:5671768-5672203	K562	blood:	n/a	n/a
34	RAD21	chr10:5671771-5672221	MCF-7	breast:	n/a	n/a
35	FOXA1	chr10:5671682-5672081	A549	lung:	n/a	n/a
36	YY1	chr10:5671793-5672092	GM12878	blood:	n/a	n/a
37	RAD21	chr10:5671761-5672272	A549	lung:	n/a	n/a
38	GATA3	chr10:5671782-5672201	T-47D	breast:	n/a	chr10:5671905-5671916
39	RAD21	chr10:5671685-5672272	HCT-116	colon:	n/a	n/a
40	CTCF	chr10:5671726-5672286	K562	blood:	n/a	n/a
41	SMC3	chr10:5671791-5672169	HepG2	liver:	n/a	n/a
42	ZC3H11A	chr10:5671660-5672062	K562	blood:	n/a	n/a
43	FOXA2	chr10:5671611-5672226	A549	lung:	n/a	n/a
44	CTCF	chr10:5671747-5672132	K562	blood:	n/a	n/a
45	RAD21	chr10:5671775-5672238	H1-hESC	embryonic stem cell:	n/a	n/a
46	CTCF	chr10:5671572-5672410	SK-N-SH	brain:	n/a	n/a
47	SMC3	chr10:5671807-5672173	Hela-S3	cervix:	n/a	n/a
48	RAD21	chr10:5671803-5672193	GM12878	blood:	n/a	n/a
49	RAD21	chr10:5671793-5672189	Hela-S3	cervix:	n/a	n/a
50	CTCF	chr10:5671754-5672177	K562	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:5666540..5670442-chr10:5670663..5674489,4	MCF-7	breast:
2	chr10:5533027..5543195-chr10:5659124..5672516,23	MCF-7	breast:
3	chr10:5668872..5673126-chr10:5707160..5709989,4	MCF-7	breast:
4	chr10:5593662..5595801-chr10:5669870..5671896,3	MCF-7	breast:
5	chr10:5484376..5493176-chr10:5653017..5671828,35	MCF-7	breast:
6	chr10:5490412..5494484-chr10:5671692..5675965,4	K562	blood:
7	chr10:5670551..5672473-chr10:5683404..5685273,2	MCF-7	breast:

No data

Variant related genes	Relation type
RN7SL445P	TF binding region
ENSG00000173848	Chromatin interaction
ENSG00000196372	Chromatin interaction
ENSG00000228685	Chromatin interaction
ENSG00000178372	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1002936	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10752145	0.83[EUR][1000 genomes]
rs10795723	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10795802	0.80[CEU][hapmap];0.83[EUR][1000 genomes]
rs10905489	0.86[EUR][1000 genomes]
rs10905519	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11255996	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11256752	1.00[JPT][hapmap]
rs11256772	0.83[CEU][hapmap];0.85[CHB][hapmap];0.85[EUR][1000 genomes]
rs1132293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1317516	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1317517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2386650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2386651	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2386652	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2386661	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs4747877	1.00[JPT][hapmap]
rs4749799	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs4749922	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073741	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7092383	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924228	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:38 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv523491	chr10:5542109-5720067	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv2757364	chr10:5557024-5720512	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
4	esv2759729	chr10:5557024-5804780	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
5	esv2758209	chr10:5637111-5804780	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv1054888	chr10:5645033-5694612	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv519582	chr10:5646103-5720067	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv894807	chr10:5647942-5691135	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv8599	chr10:5649129-5719928	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
10	nsv1050965	chr10:5649760-5717125	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
11	nsv1044330	chr10:5652006-5717125	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
12	nsv975791	chr10:5652225-5711077	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
13	nsv466720	chr10:5652277-5715401	Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
14	nsv549892	chr10:5652277-5715401	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
15	nsv1037709	chr10:5652739-5717125	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
16	nsv470917	chr10:5654167-5715401	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
17	nsv818742	chr10:5654167-5715401	Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
18	nsv1036492	chr10:5656962-5711147	Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
19	nsv540473	chr10:5656962-5711147	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
20	nsv1036253	chr10:5657162-5711008	Strong transcription Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
21	nsv540474	chr10:5657162-5711008	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
22	nsv1040422	chr10:5665458-5714630	Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
23	nsv1043251	chr10:5665458-5716555	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
24	nsv1052519	chr10:5665458-5717125	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
25	nsv1038690	chr10:5665458-5720424	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
26	nsv1039650	chr10:5665458-5720512	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
27	nsv1041684	chr10:5665458-5722299	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
28	esv2760149	chr10:5665458-5724382	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
29	nsv1054909	chr10:5665458-5724382	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
30	nsv1049620	chr10:5665458-5725208	Bivalent/Poised TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
31	nsv442170	chr10:5665462-5717127	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
32	esv2753700	chr10:5665774-5716555	Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
33	esv34623	chr10:5665774-5716858	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
34	esv35082	chr10:5665774-5716858	Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
35	esv2754101	chr10:5665774-5716858	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
36	esv2755272	chr10:5665774-5716858	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
37	nsv1038750	chr10:5668208-5711008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
38	nsv540475	chr10:5668208-5711008	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5658000-5673600	Weak transcription	Left Ventricle	heart
2	chr10:5665200-5681800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:5665400-5672600	Weak transcription	Lung	lung
4	chr10:5665400-5673800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:5665400-5680400	Weak transcription	Brain Hippocampus Middle	brain
6	chr10:5665400-5680600	Weak transcription	Fetal Brain Female	brain
7	chr10:5665600-5673400	Weak transcription	HMEC	breast
8	chr10:5665600-5680400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr10:5665600-5680400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr10:5665600-5680400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:5665600-5681800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr10:5665600-5698600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr10:5667200-5674200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:5668600-5672000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:5668800-5672000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr10:5668800-5680400	Weak transcription	Gastric	stomach
17	chr10:5669000-5676400	Enhancers	Pancreas	Pancrea
18	chr10:5669400-5674200	Weak transcription	Spleen	Spleen
19	chr10:5669600-5672200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:5670200-5672000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:5670200-5672400	Enhancers	Fetal Stomach	stomach
22	chr10:5670200-5681400	Enhancers	Fetal Thymus	thymus
23	chr10:5670400-5672800	Weak transcription	Fetal Intestine Large	intestine
24	chr10:5670400-5673000	Enhancers	Small Intestine	intestine
25	chr10:5670600-5672000	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr10:5670600-5672000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr10:5670600-5672000	Enhancers	NH-A	brain
28	chr10:5670600-5672400	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr10:5670600-5672400	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr10:5670600-5672600	Enhancers	Primary T cells from cord blood	blood
31	chr10:5670600-5672600	Enhancers	Thymus	Thymus
32	chr10:5670600-5672800	Enhancers	Stomach Mucosa	stomach
33	chr10:5670800-5672200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr10:5670800-5672400	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chr10:5670800-5672800	Weak transcription	Esophagus	oesophagus
36	chr10:5670800-5674000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr10:5671000-5672000	Enhancers	Right Atrium	heart
38	chr10:5671000-5672000	Enhancers	NHEK	skin
39	chr10:5671000-5672200	Enhancers	Duodenum Mucosa	Duodenum
40	chr10:5671000-5672200	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr10:5671000-5672600	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr10:5671000-5672600	Enhancers	HepG2	liver
43	chr10:5671000-5673400	Weak transcription	Colonic Mucosa	Colon
44	chr10:5671000-5673800	Weak transcription	Fetal Muscle Trunk	muscle
45	chr10:5671000-5674000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr10:5671000-5674000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr10:5671000-5674200	Weak transcription	Aorta	Aorta
48	chr10:5671000-5674400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr10:5671000-5680400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr10:5671000-5680800	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links